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add website files #52

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Feb 16, 2024
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48 changes: 48 additions & 0 deletions .github/workflows/pkgdown.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,48 @@
# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
push:
branches: [website]
pull_request:
branches: [website]
release:
types: [published]
workflow_dispatch:

name: pkgdown

jobs:
pkgdown:
runs-on: ubuntu-latest
# Only restrict concurrency for non-PR jobs
concurrency:
group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
permissions:
contents: write
steps:
- uses: actions/checkout@v3

- uses: r-lib/actions/setup-pandoc@v2

- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true

- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::pkgdown, local::.
needs: website

- name: Build site
run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
shell: Rscript {0}

- name: Deploy to GitHub pages 🚀
if: github.event_name != 'pull_request'
uses: JamesIves/github-pages-deploy-action@v4.4.1
with:
clean: false
branch: gh-pages
folder: docs
35 changes: 35 additions & 0 deletions _pkgdown.yml
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@@ -0,0 +1,35 @@
url: https://drieslab.github.io/GiottoData/


authors:
Joselyn Chávez:
href: https://josschavezf.github.io


template:
bootstrap: 5
bslib:
bg: "#FFFFFF"
fg: "#000000"
primary: "#7E69AE"
code_font: {google: "JetBrains Mono"}

navbar:
bg: dark
structure:
left:
- intro
- reference
right: github
components:
reference:
text: Documentation
href: reference/index.html
github:
icon: fab fa-github fa-lg
href: https://github.com/drieslab/GiottoData/
aria-label: github

home:
sidebar:
structure: [links, license, community, citation, authors, dev]
14 changes: 14 additions & 0 deletions codecov.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,14 @@
comment: false

coverage:
status:
project:
default:
target: auto
threshold: 1%
informational: true
patch:
default:
target: auto
threshold: 1%
informational: true
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