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drieslab · Aug 6, 2024 · 7b017ed · 7b017ed
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diff --git a/docs/404.html b/docs/404.html
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diff --git a/docs/contributing-to-giotto.html b/docs/contributing-to-giotto.html
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   <title>18 Contributing to Giotto | Workshop: Spatial multi-omics data analysis with Giotto Suite</title>
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   <meta property="og:type" content="book" />
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diff --git a/docs/creating-a-giotto-object.html b/docs/creating-a-giotto-object.html
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   <title>6 Creating a Giotto object | Workshop: Spatial multi-omics data analysis with Giotto Suite</title>
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   <meta property="og:type" content="book" />
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diff --git a/docs/data-formatting-and-pre-processing.html b/docs/data-formatting-and-pre-processing.html
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   <title>5 Data formatting and Pre-processing | Workshop: Spatial multi-omics data analysis with Giotto Suite</title>
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   <meta property="og:type" content="book" />
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diff --git a/docs/datasets-packages.html b/docs/datasets-packages.html
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   <title>2 Datasets &amp; Packages | Workshop: Spatial multi-omics data analysis with Giotto Suite</title>
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diff --git a/docs/index.html b/docs/index.html
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   <title>Workshop: Spatial multi-omics data analysis with Giotto Suite</title>
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diff --git a/docs/interactivity-with-the-rspatial-ecosystem.html b/docs/interactivity-with-the-rspatial-ecosystem.html
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   <title>17 Interactivity with the R/Spatial ecosystem | Workshop: Spatial multi-omics data analysis with Giotto Suite</title>
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diff --git a/docs/interoperability-with-isolated-tools.html b/docs/interoperability-with-isolated-tools.html
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diff --git a/docs/interoperability-with-other-frameworks.html b/docs/interoperability-with-other-frameworks.html
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   <title>15 Interoperability with other frameworks | Workshop: Spatial multi-omics data analysis with Giotto Suite</title>
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@@ -803,10 +803,10 @@ <h3><span class="header-section-number">15.4.3</span> Giotto To AnnData<a href="
 <span id="cb424-9"><a href="interoperability-with-other-frameworks.html#cb424-9" tabindex="-1"></a>scanpy<span class="sc">$</span>pp<span class="sc">$</span><span class="fu">log1p</span>(adata)</span>
 <span id="cb424-10"><a href="interoperability-with-other-frameworks.html#cb424-10" tabindex="-1"></a></span>
 <span id="cb424-11"><a href="interoperability-with-other-frameworks.html#cb424-11" tabindex="-1"></a><span class="co"># Perform PCA</span></span>
-<span id="cb424-12"><a href="interoperability-with-other-frameworks.html#cb424-12" tabindex="-1"></a>scanpy<span class="sc">$</span>pp<span class="sc">$</span><span class="fu">pca</span>(adata, <span class="at">n_comps=</span><span class="dv">40</span><span class="dt">L</span>)</span>
+<span id="cb424-12"><a href="interoperability-with-other-frameworks.html#cb424-12" tabindex="-1"></a>scanpy<span class="sc">$</span>pp<span class="sc">$</span><span class="fu">pca</span>(adata, <span class="at">n_comps=</span>40L)</span>
 <span id="cb424-13"><a href="interoperability-with-other-frameworks.html#cb424-13" tabindex="-1"></a></span>
 <span id="cb424-14"><a href="interoperability-with-other-frameworks.html#cb424-14" tabindex="-1"></a><span class="co"># Compute the neighborhood graph</span></span>
-<span id="cb424-15"><a href="interoperability-with-other-frameworks.html#cb424-15" tabindex="-1"></a>scanpy<span class="sc">$</span>pp<span class="sc">$</span><span class="fu">neighbors</span>(adata, <span class="at">n_neighbors=</span><span class="dv">10</span><span class="dt">L</span>, <span class="at">n_pcs=</span><span class="dv">40</span><span class="dt">L</span>)</span>
+<span id="cb424-15"><a href="interoperability-with-other-frameworks.html#cb424-15" tabindex="-1"></a>scanpy<span class="sc">$</span>pp<span class="sc">$</span><span class="fu">neighbors</span>(adata, <span class="at">n_neighbors=</span>10L, <span class="at">n_pcs=</span>40L)</span>
 <span id="cb424-16"><a href="interoperability-with-other-frameworks.html#cb424-16" tabindex="-1"></a></span>
 <span id="cb424-17"><a href="interoperability-with-other-frameworks.html#cb424-17" tabindex="-1"></a><span class="co"># Run UMAP</span></span>
 <span id="cb424-18"><a href="interoperability-with-other-frameworks.html#cb424-18" tabindex="-1"></a>scanpy<span class="sc">$</span>tl<span class="sc">$</span><span class="fu">umap</span>(adata)</span>

diff --git a/docs/introduction-to-the-giotto-package.html b/docs/introduction-to-the-giotto-package.html
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diff --git a/docs/spatial-omics-technologies.html b/docs/spatial-omics-technologies.html
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diff --git a/docs/spatial-proteomics-multiplexed-immunofluorescence.html b/docs/spatial-proteomics-multiplexed-immunofluorescence.html
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