Added tmp directory flags missing subroutines #1
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The --tmpdir flag was not invoked for the palm_hmm_motif_search.py, palm_hmm_search.py, or palm_diamond_motif_search.py scripts causing them to write to /tmp/ even when the user specified a custom temporary directory.
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The --tmpdir flag was not invoked for the palm_hmm_motif_search.py, palm_hmm_search.py, or palm_diamond_motif_search.py scripts causing them to write to /tmp/ even when the user specified a custom temporary directory.