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v0.4.2

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@earmingol earmingol released this 18 Feb 11:15
· 2 commits to main since this release
v0.4.2
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What's Changed

  • v0.4.2 by @earmingol in #6
    • This PR includes a series of improvements:
      • Network plot for visualizing cell-cell communication
      • Added function to select markers from TF-IDF results
      • Harmonized outputs across differential analyses
      • Implemented subsampling in differential analysis
      • Added beeswarm plot for visualizing results from differential analysis
      • Added information about cell fraction using determinant genes of metabolic reactions
      • Added tight_layout parameter to select whether using it or not in plots
      • Improved a few docstrings
      • Fixed minor bugs

EDIT

Phenylalanine-associated tasks were rolled back by @earmingol in #8 and modified as follows:

Changes in #7 were incorrect.

Phenylalanine to phenylacetyl-L-glutaminate only had reactions ALDD19xr (r0545), PHYCBOXL, and PEAMNO since there are no GPR rules for PACCOAL and PHACCOAGLNAC.

Screenshot 2025-02-18 at 11 08 53

For this reason, Phenylalanine to phenylacetyl-L-glutaminate was renamed to Phenylalanine to phenylacetate (via phenylacetaldehyde)

These changes to phenylalanine tasks are not contained in this release source code, containing #7 instead. For lastest version check the main branch

Full Changelog: v0.4.1...v0.4.2

Contributors

earmingol
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