mark fdb tests

.github/workflows/ci.yaml

@@ -131,7 +131,7 @@ jobs:
           LD_LIBRARY_PATH: ${{ steps.install-dependencies.outputs.lib_path }}
         shell: bash -eux {0}
         run: |
-          DYLD_LIBRARY_PATH=${{ env.LD_LIBRARY_PATH }} python -m pytest tests --cov=./ --cov-report=xml
+          DYLD_LIBRARY_PATH=${{ env.LD_LIBRARY_PATH }} python -m pytest -m "not fdb" tests --cov=./ --cov-report=xml
           python -m coverage report
 
       - name: Upload coverage to Codecov

performance/fdb_slice_many_numbers_timeseries.py

@@ -1,7 +1,6 @@
 import time
 
 import pandas as pd
-import pytest
 
 from polytope.datacube.backends.fdb import FDBDatacube
 from polytope.engine.hullslicer import HullSlicer
@@ -29,7 +28,6 @@ def setup_method(self, method):
         self.API = Polytope(datacube=self.fdbdatacube, engine=self.slicer, axis_options=self.options)
 
     # Testing different shapes
-    # @pytest.mark.skip(reason="can't install fdb branch on CI")
     def test_fdb_datacube(self):
         request = Request(
             # Select("step", [0]),

pyproject.toml

@@ -4,4 +4,5 @@ line-length = 120
 requires = ["setuptools>=61.0"]
 build-backend = "setuptools.build_meta"
 [tool.pytest.ini_options]
-markers = ["internet: downloads test data from the internet (deselect with '-m \"not internet\"')",]
+markers = ["internet: downloads test data from the internet (deselect with '-m \"not internet\"')",
+            "fdb: test which uses fdb (deselect with '-m \"not fdb\"')",] 

tests/test_fdb_datacube.py

@@ -21,15 +21,15 @@ def setup_method(self, method):
             },
             "date": {"transformation": {"merge": {"with": "time", "linkers": ["T", "00"]}}},
             "step": {"transformation": {"type_change": "int"}},
-            "number": {"transformation": {"type_change": "int"}}
+            "number": {"transformation": {"type_change": "int"}},
         }
         self.config = {"class": "od", "expver": "0001", "levtype": "sfc", "step": 0}
         self.fdbdatacube = FDBDatacube(self.config, axis_options=self.options)
         self.slicer = HullSlicer()
         self.API = Polytope(datacube=self.fdbdatacube, engine=self.slicer, axis_options=self.options)
 
     # Testing different shapes
-    # @pytest.mark.skip(reason="can't install fdb branch on CI")
+    @pytest.mark.fdb
     def test_fdb_datacube(self):
         request = Request(
             Select("step", [0]),

tests/test_incomplete_tree_fdb.py

@@ -51,7 +51,7 @@ def find_nearest_latlon(self, grib_file, target_lat, target_lon):
         return nearest_points
 
     @pytest.mark.internet
-    # @pytest.mark.skip(reason="can't install fdb branch on CI")
+    @pytest.mark.fdb
     def test_incomplete_fdb_branch(self):
         request = Request(
             Select("step", [0]),
@@ -74,7 +74,7 @@ def test_incomplete_fdb_branch(self):
         assert result.is_root()
 
     @pytest.mark.internet
-    # @pytest.mark.skip(reason="can't install fdb branch on CI")
+    @pytest.mark.fdb
     def test_incomplete_fdb_branch_2(self):
         request = Request(
             Select("step", [0]),

tests/test_regular_grid.py

@@ -54,7 +54,7 @@ def find_nearest_latlon(self, grib_file, target_lat, target_lon):
         return nearest_points
 
     @pytest.mark.internet
-    # @pytest.mark.skip(reason="can't install fdb branch on CI")
+    @pytest.mark.fdb
     def test_regular_grid(self):
         request = Request(
             Select("step", [0]),

tests/test_shapes.py

@@ -39,7 +39,7 @@ def test_all_cyclic(self):
         # result.pprint()
         assert len(result.leaves) == 360
 
-    # @pytest.mark.skip(reason="can't install fdb branch on CI")
+    @pytest.mark.fdb
     def test_all_mapper_cyclic(self):
         self.options = {
             "values": {
@@ -50,7 +50,7 @@ def test_all_mapper_cyclic(self):
             "date": {"transformation": {"merge": {"with": "time", "linkers": ["T", "00"]}}},
             "step": {"transformation": {"type_change": "int"}},
             "longitude": {"transformation": {"cyclic": [0, 360]}},
-            "number": {"transformation": {"type_change": "int"}}
+            "number": {"transformation": {"type_change": "int"}},
         }
         self.config = {"class": "od", "expver": "0001", "levtype": "sfc", "step": 11}
         self.fdbdatacube = FDBDatacube(self.config, axis_options=self.options)

tests/test_slice_date_range_fdb.py

@@ -18,15 +18,15 @@ def setup_method(self, method):
             },
             "date": {"transformation": {"merge": {"with": "time", "linkers": ["T", "00"]}}},
             "step": {"transformation": {"type_change": "int"}},
-            "number": {"transformation": {"type_change": "int"}}
+            "number": {"transformation": {"type_change": "int"}},
         }
         self.config = {"class": "od", "expver": "0001", "levtype": "sfc", "step": 0}
         self.fdbdatacube = FDBDatacube(self.config, axis_options=self.options)
         self.slicer = HullSlicer()
         self.API = Polytope(datacube=self.fdbdatacube, engine=self.slicer, axis_options=self.options)
 
     # Testing different shapes
-    # @pytest.mark.skip(reason="can't install fdb branch on CI")
+    @pytest.mark.fdb
     def test_fdb_datacube(self):
         request = Request(
             Select("step", [0]),