Adjust tests to point to WORKSPACE environment variable for data folder.

+scanreader/ScanTest.m

@@ -2,7 +2,7 @@
 classdef ScanTest < matlab.unittest.TestCase
     %SCANTEST Test scans from different ScanImage versions.
     properties
-       dataDir = '/home/ecobost/Documents/scanreader/data'
+       dataDir = fullfile(getenv('WORKSPACE'),'data');
        scanFile5_1 % 2 channels, 3 slices
        scanFile5_2 % 2 channels, 3 slices
        scanFile2016bMultiroi % all rois have same dimensions, 1 channel 5 slices
@@ -14,6 +14,8 @@
 
     methods (TestClassSetup)
         function createfilenames(testCase)
+            testCase.assumeThat(exist(testCase.dataDir), IsEqualTo(7), ...
+                'The data could not be found. It cant be checked into the repo due to size constraints.');
             testCase.scanFile5_1 = fullfile(testCase.dataDir, 'scan_5_1_001.tif');
             testCase.scanFile5_2 = fullfile(testCase.dataDir, 'scan_5_2.tif');
             testCase.scanFile2016bMultiroi = fullfile(testCase.dataDir, 'scan_2016b_multiroi_001.tif');
@@ -333,9 +335,14 @@ function testexceptions(testCase)
 
     methods
         % Local functions
-        function assertequalshapeandsum(testCase, array, expectedShape, expectedSum)
-            testCase.verifyEqual(size(array), expectedShape)
-            testCase.verifyEqual(sum(array(:)), expectedSum)
+        function assertequalshapeandsum(testCase, array, expectedSize, expectedSum)
+            testCase.assertSize(array, expectedSize);
+            testCase.assertEqual(sum(array(:)), expectedSum);
         end
     end
-end
+end
+
+% "import" functions
+function c = IsEqualTo(varargin)
+c = matlab.unittest.constraints.IsEqualTo(varargin{:});
+end

+scanreader/StackTest.m

@@ -1,7 +1,7 @@
 classdef StackTest < matlab.unittest.TestCase
     %STACKTEST Test stacks from different ScanImage versions.
     properties
-       dataDir = '/home/ecobost/Documents/scanreader/data'
+       dataDir = fullfile(getenv('WORKSPACE'),'data');
        stackFile5_1 % 2 channels, 60 slices
        stackFile2016b % 1 channel, 1 slice, mroiEnable = false
        stackFile5_1Multifiles % second has 10 slices
@@ -10,6 +10,8 @@
 
     methods (TestClassSetup)
         function createfilenames(testCase)
+            testCase.assumeThat(exist(testCase.dataDir), IsEqualTo(7), ...
+                'The data could not be found. It cant be checked into the repo due to size constraints.');
             testCase.stackFile5_1 = fullfile(testCase.dataDir, 'stack_5_1_001.tif');
             testCase.stackFile2016b = fullfile(testCase.dataDir, 'stack_2016b.tif');
             testCase.stackFile5_1Multifiles = {fullfile(testCase.dataDir, 'stack_5_1_001.tif'), fullfile(testCase.dataDir, 'stack_5_1_002.tif')};
@@ -193,9 +195,14 @@ function test2016bmultiroi(testCase)
     methods
         % Local functions
         function assertequalshapeandsum(testCase, array, expectedShape, expectedSum)
-            testCase.verifyEqual(size(array), expectedShape)
-            testCase.verifyEqual(sum(array(:)), expectedSum)
+            testCase.assertSize(array, expectedShape)
+            testCase.assertEqual(sum(array(:)), expectedSum)
         end
     end
 end
 
+% "Import" functions
+function c = IsEqualTo(varargin)
+c = matlab.unittest.constraints.IsEqualTo(varargin{:});
+end
+

runALL_THE_TESTS.m

@@ -0,0 +1,31 @@
+try
+    import('matlab.unittest.TestRunner');
+    import('matlab.unittest.plugins.XMLPlugin');
+    import('matlab.unittest.plugins.ToFile');
+    import('matlab.unittest.plugins.CodeCoveragePlugin');
+    import('matlab.unittest.plugins.codecoverage.CoberturaFormat');
+
+    ws = getenv('WORKSPACE');
+
+    suite = testsuite('scanreader');
+
+    % Create and configure the runner
+    runner = TestRunner.withTextOutput('Verbosity',3);
+
+    % Add the XML plugin
+    resultsDir = fullfile(ws, 'testresults');
+    mkdir(resultsDir);
+
+    resultsFile = fullfile(resultsDir, 'testResults.xml');
+    runner.addPlugin(XMLPlugin.producingJUnitFormat(resultsFile));
+
+    coverageFile = fullfile(resultsDir, 'cobertura.xml');
+    runner.addPlugin(CodeCoveragePlugin.forPackage('scanreader',...
+        'Producing', CoberturaFormat(coverageFile),'IncludingSubpackages',true));
+
+    results = runner.run(suite) 
+catch e
+    disp(getReport(e,'extended'));
+    exit(1);
+end
+quit('force');