Merge pull request #14 from eipm/combine-pindel-fix

Remove combine pindel typo
eipm · Dec 9, 2020 · 0cf9e41 · 0cf9e41
2 parents cd51703 + b1a9b9f
commit 0cf9e41
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/combine_pindel_vcfs.sh b/combine_pindel_vcfs.sh
@@ -1,5 +1,5 @@
 DOI=$1
 FOIS=( $(ls $DOI/*vcf | egrep -e '(pindel_LI|pindel_RP|pindel_SI|pindel_TD|pindel_INV|pindel_INT_final|pindel_D)') )
 FINAL_FILE=$DOI"/pindel_all.vcf"
-VCFS_STR=for i in "$(FOIS[*]}"; do echo "$i"; done
-vcf-concat -p $VCFS_STR >  $FINAL_FILE
+VCFS_STR=for i in "${FOIS[*]}"; do echo "$i"; done
+vcf-concat -p $VCFS_STR >  $FINAL_FILE