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| name: tests & build | ||
| on: | ||
| push: | ||
| branches: | ||
| - master | ||
| - main | ||
| tags-ignore: | ||
| - v[0-9].[0-9].[0-9] # prevent double runs for vM.N.P releases | ||
| pull_request: | ||
| branches: | ||
| - master | ||
| - main | ||
| workflow_dispatch: | ||
| inputs: | ||
| debug_enabled: | ||
| description: 'Run workflow with ssh debugging' | ||
| required: false | ||
| default: false | ||
|
|
||
| schedule: | ||
| - cron: '0 0 * * 0' | ||
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| env: | ||
| PACKAGE_NAME: pymer4 | ||
| DEPLOY_PY_VER: 3.8 # only this job deploys docs, anaconda.org, pypi | ||
| DEPLOY_OS: ubuntu-latest | ||
| CONDA_BLD_PATH: /tmp/ci_conda_bld | ||
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||
| defaults: | ||
| run: | ||
| # login shell to source the conda hook in .bash_profile | ||
| shell: | ||
| bash -l {0} | ||
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|
||
| jobs: | ||
| ci: | ||
| runs-on: ${{ matrix.os }} | ||
| strategy: | ||
| matrix: | ||
| py_ver: [3.7, 3.8, 3.9] | ||
| os: [ubuntu-latest, macos-10.15] # Intel macs | ||
|
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||
| outputs: | ||
| # tarballs are py3X job-specific | ||
| conda-tarball: ${{ steps.conda-bld.outputs.conda-tarball }} | ||
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||
| steps: | ||
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||
| # ------------------------------------------------------------ | ||
| # 0. Print some basic github action info | ||
| - name: diagnostic info | ||
| run: | | ||
| echo "OS: ${{ matrix.os }}" | ||
| echo "Python: ${{ matrix.py_ver }}" | ||
| echo "Conda build path: $CONDA_BLD_PATH" | ||
| echo "Deploy OS: $DEPLOY_OS" | ||
| echo "Deploy Python: $DEPLOY_PY_VER" | ||
| echo "GA event name: ${{ github.event_name }}" | ||
| echo "GA ref: ${{ github.ref }}" | ||
| # ------------------------------------------------------------ | ||
| # 1. Grab git repo, setup miniconda environment and packages required to build | ||
| - uses: actions/checkout@v2 | ||
| - name: Setup Miniconda + Checkout code | ||
| run: | | ||
| echo "GIT_ABBREV_COMMIT=_g${GITHUB_SHA:0:8}" >> $GITHUB_ENV | ||
| if [[ ${{ runner.os }} == Linux ]]; then \ | ||
| miniconda_url='https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh'; \ | ||
| fi | ||
| if [[ ${{ runner.os }} == macOS ]]; then \ | ||
| miniconda_url='https://repo.anaconda.com/miniconda/Miniconda3-latest-MacOSX-x86_64.sh'; \ | ||
| fi | ||
| wget $miniconda_url -O $HOME/miniconda.sh | ||
| bash ~/miniconda.sh -b -p $HOME/miniconda | ||
| hash -r | ||
| $HOME/miniconda/bin/conda shell.bash hook >> ~/.bash_profile | ||
| source ~/.bash_profile | ||
| hash -r | ||
| conda config --set always_yes yes --set changeps1 no | ||
| conda config --set bld_path $CONDA_BLD_PATH | ||
| conda install -n base -q conda-build conda-verify anaconda-client | ||
| echo "# ------------------------------------------------------------" | ||
| conda info -a | ||
| # ------------------------------------------------------------ | ||
| # 2. Build the conda package and tarballs for each OS | ||
| # env defined here are just for convenience when writing bash commands | ||
| - name: Build package | ||
| id: conda-bld | ||
| env: | ||
| OS: ${{ runner.os }} | ||
| PY_VER: ${{ matrix.py_ver }} | ||
| run: | | ||
| conda build --python=$PY_VER -c defaults -c conda-forge conda | ||
| tarball=$(conda build --python=$PY_VER conda --output | tail -1) | ||
| if [[ $OS == "Linux" ]]; then \ | ||
| conda convert -p win-64 -o $CONDA_BLD_PATH $tarball; \ | ||
| fi | ||
| echo "conda build tarball" $tarball | ||
| echo "::set-output name=conda-tarball::$tarball" | ||
| # ------------------------------------------------------------ | ||
| # 3. Create new conda env and install package locally | ||
| # Test installation worked | ||
| # Get black and pytest from pip because black version on conda lags behind | ||
| - name: Create and test fresh installation | ||
| env: | ||
| PY_VER: ${{ matrix.py_ver }} | ||
| run: | | ||
| conda create -n env_$PY_VER python=$PY_VER $PACKAGE_NAME -c $CONDA_BLD_PATH -c defaults -c conda-forge | ||
| conda activate env_$PY_VER | ||
| pip install black pytest-cov | ||
| conda list | ||
| lscpu | ||
| python -c 'import numpy; numpy.show_config()' | ||
| python -c "from pymer4.test_install import test_install; test_install()" | ||
| # # 4. Run code tests, formatting, and coverage | ||
| - name: Run tests + coverage | ||
| env: | ||
| PY_VER: ${{ matrix.py_ver }} | ||
| run: | | ||
| conda activate env_$PY_VER | ||
| black --check --verbose . | ||
| pytest --cov=$PACKAGE_NAME | ||
| # 5a. Build docs (only for 3.8 which handles deployment) | ||
| # Will also run on PRs which serves as another layer of testing | ||
| - name: Build docs | ||
| env: | ||
| PY_VER: ${{ matrix.py_ver }} | ||
| if: ${{ matrix.py_ver == env.DEPLOY_PY_VER && matrix.os == env.DEPLOY_OS }} | ||
| run: | | ||
| conda activate env_$PY_VER | ||
| conda install sphinx sphinx_bootstrap_theme sphinx-gallery -c conda-forge | ||
| cd docs && make clean && make html | ||
| touch _build/html/.nojekyll | ||
| # 5b. Deploy docs (only for 3.8 which handles deployment) | ||
| # Only runs when a PR is merged into master or there's a direct push to master | ||
| - name: Deploy docs | ||
| env: | ||
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
| if: ${{ (matrix.py_ver == env.DEPLOY_PY_VER && matrix.os == env.DEPLOY_OS) && ((github.event_name == 'push' && github.ref == 'refs/heads/master') || (github.event.pull_request.merged && github.base_ref == 'master' && github.head_ref == 'dev')) }} | ||
| uses: crazy-max/ghaction-github-pages@v2 | ||
| with: | ||
| target_branch: gh-pages | ||
| build_dir: docs/_build/html | ||
|
|
||
| # 6. Build package for PyPi (only for 3.8 which handles deployment) | ||
| - name: Build for Pypi | ||
| if: ${{ matrix.py_ver == env.DEPLOY_PY_VER && matrix.os == env.DEPLOY_OS }} | ||
| run: | | ||
| conda activate env_$PY_VER | ||
| pip install build | ||
| python -m build --sdist --wheel --outdir dist/ | ||
| # 7. Deploy package to Pypi (only for 3.8 which handles deployment) | ||
| # Only runs when a manual github release is created | ||
| - name: PyPi deploy | ||
| if: ${{ matrix.py_ver == env.DEPLOY_PY_VER && matrix.os == env.DEPLOY_OS && github.event_name == 'release'}} | ||
| uses: pypa/gh-action-pypi-publish@master | ||
| with: | ||
| password: ${{ secrets.PYPI_API_TOKEN }} | ||
|
|
||
| # 8a. Deploy package to main conda channel (only for 3.8 which handles deployment) | ||
| # Only runs when a manual github release is created | ||
| - name: Conda main deploy | ||
| if: ${{ matrix.py_ver == env.DEPLOY_PY_VER && matrix.os == env.DEPLOY_OS && github.event_name == 'release' }} | ||
| env: | ||
| ANACONDA_TOKEN: ${{ secrets.ANACONDA_TOKEN }} | ||
| run: | | ||
| echo 'Conda release on main channel' | ||
| anaconda -t "$ANACONDA_TOKEN" upload $CONDA_BLD_PATH/**/${PACKAGE_NAME}*.tar.bz2 -l "main" | ||
| # OR ----- | ||
|
|
||
| # 8b. Deploy package to pre-release conda channel (only for 3.8 which handles deployment) | ||
| # Only runs when a PR is merged into master or there's a direct push to master | ||
| - name: Conda pre-release deploy | ||
| if: ${{ (matrix.py_ver == env.DEPLOY_PY_VER && matrix.os == env.DEPLOY_OS) && ((github.event_name == 'push' && github.ref == 'refs/heads/master') || (github.event.pull_request.merged && github.base_ref == 'master' && github.head_ref == 'dev')) }} | ||
| env: | ||
| ANACONDA_TOKEN: ${{ secrets.ANACONDA_TOKEN }} | ||
| run: | | ||
| echo 'Conda release on pre-release channel' | ||
| anaconda -t "$ANACONDA_TOKEN" upload $CONDA_BLD_PATH/**/${PACKAGE_NAME}*.tar.bz2 -l "pre-release" | ||
| # N. Optionall debug via ssh if workflow is run manually with debug_enabled = true | ||
| - name: Setup SSH session | ||
| if: ${{ github.event_name == 'workflow_dispatch' && github.events.inputs.debug_enabled }} | ||
| uses: mxschmitt/action-tmate@v3 |
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