GitHub - elijahlowe/molgula

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Name		Name	Last commit message	Last commit date
Latest commit History 31 Commits
qsub		qsub
scripts		scripts
README.txt		README.txt
Trimming_and_filtering.txt		Trimming_and_filtering.txt
annotate.mk		annotate.mk
assemble.mk		assemble.mk
assemble_occulta.sh		assemble_occulta.sh
assemble_occulta.txt		assemble_occulta.txt
assemble_oculata.sh		assemble_oculata.sh
assemble_oculata.sh~		assemble_oculata.sh~
blast_and_filter.sh		blast_and_filter.sh
blast_and_filter.sh~		blast_and_filter.sh~
ciona_transcriptome.fa		ciona_transcriptome.fa
install.sh		install.sh
molgula_bowtie.sh		molgula_bowtie.sh
molgula_bowtie.sh~		molgula_bowtie.sh~
molgula_bowtie_pe.sh		molgula_bowtie_pe.sh
molgula_de_analysis.R		molgula_de_analysis.R
occ_species.mk		occ_species.mk
occulta_dn_and_assemble.sh		occulta_dn_and_assemble.sh
occulta_dn_and_assemble.sh~		occulta_dn_and_assemble.sh~
oculata_dn_and_assemble.sh		oculata_dn_and_assemble.sh
oculata_dn_and_assemble.sh~		oculata_dn_and_assemble.sh~
run_pipeline.sh		run_pipeline.sh
run_pipeline.sh~		run_pipeline.sh~
run_piple.sh		run_piple.sh
run_piple.sh~		run_piple.sh~
trim_n_filter.sh		trim_n_filter.sh

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This is an assembly pipeline to assemble M. occult and M. oculata transcriptomes. Begin by mounting the snap-e7610282 snapshot to a directory called /data/. next run the run_pipeline.sh script and things should crash horribly and I will fix them.
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molgula_pipeline
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>>>>>>> 7c5f0b5b72d8b4ae3eb639e17557985036bffc65