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update data types and examples
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jsimonclark committed Aug 14, 2024
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2 changes: 2 additions & 0 deletions .gitignore
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# Ignore the virtual environment directory
.venv/
6 changes: 3 additions & 3 deletions catalog-v001.xml
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<catalog prefer="public" xmlns="urn:oasis:names:tc:entity:xmlns:xml:catalog">
<uri id="Imports Wizard Entry" name="https://w3id.org/emmo/1.0.0-beta7" uri="https://raw.githubusercontent.com/emmo-repo/EMMO/1.0.0-beta7/emmo.ttl"/>
<group id="Folder Repository, directory=, recursive=true, Auto-Update=false, version=2" prefer="public" xml:base="">
<uri name="https://w3id.org/emmo/domain/chemical-substance/0.7.0-beta/chemical-substance" uri="https://raw.githubusercontent.com/emmo-repo/domain-chemical-substance/main/chemical-substance.ttl"/>
<uri name="https://w3id.org/emmo/domain/chemical-substance/0.8.0-beta/chemical-substance" uri="https://raw.githubusercontent.com/emmo-repo/domain-chemical-substance/main/chemical-substance.ttl"/>
<uri name="https://w3id.org/emmo/domain/characterisation-methodology/chameo" uri="https://raw.githubusercontent.com/emmo-repo/domain-characterisation-methodology/main/chameo.ttl"/>
<uri name="https://w3id.org/emmo/domain/electrochemistry/0.20.0-beta/electrochemistry" uri="./electrochemistry.ttl"/>
<uri name="https://w3id.org/emmo/domain/electrochemistry/0.20.0-beta/electrochemicalquantities" uri="./electrochemicalquantities.ttl"/>
<uri name="https://w3id.org/emmo/domain/electrochemistry/0.21.0-beta/electrochemistry" uri="./electrochemistry.ttl"/>
<uri name="https://w3id.org/emmo/domain/electrochemistry/0.21.0-beta/electrochemicalquantities" uri="./electrochemicalquantities.ttl"/>

<uri name="https://w3id.org/emmo/1.0.0-beta7/mereocausality" uri="https://raw.githubusercontent.com/emmo-repo/EMMO/1.0.0-beta7/mereocausality/mereocausality.ttl"/>

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}
]
},
"hasInput": [
{
"@type": "ElectrochemicalDevice"
},
{
"@type": "NumberOfIterations",
"hasNumericalPart": {
"@type": "Real",
"hasNumericalValue": 10
},
"hasMeasurementUnit": "emmo:UnitOne"
}
],
"hasOutput": [
{
"@type": "TimeSeriesDataSet",
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"@type": "VoltageData"
},
{
"@type": "CurrentData"
"@type": "ElectricCurrentData"
}
]
}
],
"hasTemporaryParticipant": {
"@type": "ElectrochemicalWorkstation"
},
"hasSubProcess": [
{
"@type": ["VoltageMeasurement", "TimeSeriesMeasurement"],
"hasMeasurementParameter": [
{
"@type": "SamplingRate"
},
{
"@type": "Precision"
}
]
},
{
"@type": ["ElectricCurrentMeasurement", "TimeSeriesMeasurement"],
"hasMeasurementParameter": [
{
"@type": "SamplingRate"
},
{
"@type": "Precision"
}
]
},
{
"@type": ["TimeMeasurement", "TimeSeriesMeasurement"],
"hasMeasurementParameter": [
{
"@type": "SamplingRate"
},
{
"@type": "Precision"
}
]
},
{
"@type": ["TemperatureMeasurement", "TimeSeriesMeasurement"],
"hasMeasurementParameter": [
{
"@type": "SamplingRate"
},
{
"@type": "Precision"
}
]
}
],
"hasTask": {
"@type": "ConstantCurrentDischarging",
"hasMeasurementParameter": [
"hasInput": [
{
"@type": "DischargingCurrent",
"hasNumericalPart": {
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"hasMeasurementUnit": "emmo:Ampere"
},
{
"@type": ["LowerVoltageLimit", "TerminationQuantity"],
"@type": ["LowerVoltageLimit"],
"hasNumericalPart": {
"@type": "Real",
"hasNumericalValue": 2.4
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],
"hasNext": {
"@type": "ConstantCurrentCharging",
"hasMeasurementParameter": [
"hasInput": [
{
"@type": "ChargingCurrent",
"hasNumericalPart": {
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"hasMeasurementUnit": "emmo:Ampere"
},
{
"@type": ["UpperVoltageLimit", "TerminationQuantity"],
"@type": ["UpperVoltageLimit"],
"hasNumericalPart": {
"@type": "Real",
"hasNumericalValue": 4.2
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}
],
"hasNext": {
"@type": "ConstantVoltageCharging",
"hasMeasurementParameter": [
"@type": ["ConstantVoltageCharging", "EndTask"],
"hasInput": [
{
"@type": "ChargingVoltage",
"hasNumericalPart": {
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"hasMeasurementUnit": "emmo:Volt"
},
{
"@type": ["UpperCurrentLimit", "TerminationQuantity"],
"@type": ["LowerCurrentLimit"],
"hasNumericalPart": {
"@type": "Real",
"hasNumericalValue": 10
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3 changes: 1 addition & 2 deletions docs/assets/jsonld/fair_compliance_template.jsonld
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},
"http://schema.org/license": "http://opendefinition.org/licenses/cc-by/",
"dc:format": "application/ld+json",
"dc:accessRights": "public",
"dc:rights": "public",
"dc:accessRights": "open access",
"dc:publisher": {
"@type": "schema:ResearchOrganization",
"@id": "https://ror.org/01f677e56",
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137 changes: 137 additions & 0 deletions docs/examples/example_zinc_foil.ipynb
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{
"cells": [
{
"cell_type": "code",
"execution_count": 12,
"metadata": {},
"outputs": [],
"source": [
"# Import necessary libraries\n",
"from rdflib import Graph\n",
"from ontopy import get_ontology\n",
"import json\n",
"\n",
"# Load the ontology\n",
"echo = get_ontology('https://w3id.org/emmo/domain/electrochemistry/inferred').load()\n"
]
},
{
"cell_type": "code",
"execution_count": 13,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"Diameter: 2 https://w3id.org/emmo#CentiMetre\n"
]
}
],
"source": [
"# Create an RDF graph\n",
"g = Graph()\n",
"\n",
"# Load the JSON-LD data\n",
"json_ld_data = {\n",
" \"@context\": \"https://w3id.org/emmo/domain/electrochemistry/context\",\n",
" \"@type\": \"Electrode\",\n",
" \"schema:manufacturer\": {\n",
" \"@type\": \"schema:ResearchOrganization\",\n",
" \"@id\": \"https://www.wikidata.org/wiki/Q3041255\",\n",
" \"schema:name\": \"SINTEF\"\n",
" },\n",
" \"schema:creator\": {\n",
" \"@type\": \"schema:Person\",\n",
" \"@id\": \"https://orcid.org/0000-0002-8758-6109\",\n",
" \"schema:name\": \"Simon Clark\"\n",
" },\n",
" \"hasActiveMaterial\": {\n",
" \"@type\": [\"Zinc\", \"Foil\"]\n",
" },\n",
" \"hasProperty\": [\n",
" {\n",
" \"@type\": [\"SpecificCapacity\", \"MeasuredProperty\"],\n",
" \"hasNumericalPart\": {\n",
" \"@type\": \"Real\",\n",
" \"hasNumericalValue\": 800\n",
" },\n",
" \"hasMeasurementUnit\": \"emmo:MilliAmpereHourPerGram\"\n",
" },\n",
" {\n",
" \"@type\": [\"Thickness\", \"ConventionalProperty\"],\n",
" \"hasNumericalPart\": {\n",
" \"@type\": \"Real\",\n",
" \"hasNumericalValue\": 250\n",
" },\n",
" \"hasMeasurementUnit\": \"emmo:MicroMetre\"\n",
" },\n",
" {\n",
" \"@type\": [\"Diameter\", \"MeasuredProperty\"],\n",
" \"hasNumericalPart\": {\n",
" \"@type\": \"Real\",\n",
" \"hasNumericalValue\": 2\n",
" },\n",
" \"hasMeasurementUnit\": \"emmo:CentiMetre\"\n",
" },\n",
" {\n",
" \"@type\": [\"Mass\", \"MeasuredProperty\"],\n",
" \"hasNumericalPart\": {\n",
" \"@type\": \"Real\",\n",
" \"hasNumericalValue\": 2.5\n",
" },\n",
" \"hasMeasurementUnit\": \"emmo:Gram\"\n",
" }\n",
" ]\n",
"}\n",
"\n",
"# Convert JSON-LD data to RDF and add to the graph\n",
"g.parse(data=json.dumps(json_ld_data), format='json-ld')\n",
"\n",
"# Query the graph to get the diameter\n",
"query = f\"\"\"\n",
"SELECT ?diameterValue ?measurementUnit\n",
"WHERE {{\n",
" ?electrode a <{echo.Electrode.iri}> ;\n",
" <{echo.hasProperty.iri}> ?property .\n",
"\n",
" ?property a <{echo.Diameter.iri}> ;\n",
" <{echo.hasNumericalPart.iri}> ?numericalPart ;\n",
" <{echo.hasMeasurementUnit.iri}> ?measurementUnit .\n",
"\n",
" ?numericalPart <{echo.hasNumericalValue.iri}> ?diameterValue .\n",
"}}\n",
"\"\"\"\n",
"\n",
"# Run the query\n",
"results = g.query(query)\n",
"\n",
"# Print results\n",
"for row in results:\n",
" unit = row.measurementUnit\n",
" print(f\"Diameter: {row.diameterValue} {row.measurementUnit}\")\n"
]
}
],
"metadata": {
"kernelspec": {
"display_name": ".venv",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.10.10"
}
},
"nbformat": 4,
"nbformat_minor": 2
}
1 change: 1 addition & 0 deletions docs/scripts/file
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4 changes: 2 additions & 2 deletions electrochemicalquantities.ttl
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@base <https://w3id.org/emmo/domain/electrochemistry/electrochemicalquantities> .

<https://w3id.org/emmo/domain/electrochemistry/electrochemicalquantities> rdf:type owl:Ontology ;
owl:versionIRI <https://w3id.org/emmo/domain/electrochemistry/0.20.0-beta/electrochemicalquantities> ;
owl:versionIRI <https://w3id.org/emmo/domain/electrochemistry/0.21.0-beta/electrochemicalquantities> ;
owl:imports <https://w3id.org/emmo/1.0.0-beta7/disciplines/isq> ;
dcterms:abstract "This electrochemical quantities ontology is a domain of the Elementary Multiperspective Materials Ontology (EMMO). It is a specialized framework designed to represent and organize knowledge about electrochemical quantities. It is designed to integrate with the electrochemistry domain ontology or other ontologies from the EMMO ecosystem. The main focus of this ontology is to provide machine-readable descriptions of common electrochemical quantities, linking both to the larger descriptions of physical quantities in EMMO as well as other sources of information like the IEC, QUDT, Wikidata, etc. It should be used to support linked data generation in the electrochemistry domain."@en ;
dcterms:contributor <https://orcid.org/0000-0001-8869-3718> ,
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dcterms:creator <https://orcid.org/0000-0002-8758-6109> ,
<https://orcid.org/0000-0003-2954-1233> ;
dcterms:license "https://creativecommons.org/licenses/by/4.0/legalcode" ;
owl:versionInfo "0.20.0-beta" .
owl:versionInfo "0.21.0-beta" .

#################################################################
# Annotation properties
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