add url #208
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: GitHub Actions Demo | |
| on: [push] | |
| jobs: | |
| cwl_tests: | |
| name: Run cwl_tests.sh | |
| runs-on: ubuntu-20.04 | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get install -y python3-pip | |
| pip install cwltool lockfile | |
| - uses: actions/checkout@v2 | |
| - run: | | |
| ls | |
| - name: Validate workflow | |
| run: | | |
| cwltool --validate workflows/gos_wf.cwl | |
| # - uses: conda-incubator/setup-miniconda@v2 | |
| # with: | |
| # activate-environment: anaconda-client-env | |
| # environment-file: etc/environment.yml | |
| # python-version: 3.7 | |
| # condarc-file: etc/condarc.yml | |
| # auto-activate-base: false | |
| # - run: | | |
| # conda info | |
| # conda list | |
| # - name: Install sudo dependencies | |
| # run: sudo apt-get install -y tabix | |
| # - name: Run cwl test from base repo | |
| # run: | | |
| # cd cwl_tests/ | |
| # bash run_tests.sh |