ioulias comments #216
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| name: GitHub Actions Demo | |
| on: [push] | |
| jobs: | |
| cwl_tests: | |
| name: Run cwl_tests.sh | |
| runs-on: ubuntu-20.04 | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get install -y python3-pip | |
| pip install cwltool lockfile | |
| - uses: actions/checkout@v2 | |
| - run: | | |
| ls | |
| - name: Validate workflow | |
| run: | | |
| cwltool --validate workflows/gos_wf.cwl | |
| # - uses: conda-incubator/setup-miniconda@v2 | |
| # with: | |
| # activate-environment: anaconda-client-env | |
| # environment-file: etc/environment.yml | |
| # python-version: 3.7 | |
| # condarc-file: etc/condarc.yml | |
| # auto-activate-base: false | |
| # - run: | | |
| # conda info | |
| # conda list | |
| # - name: Install sudo dependencies | |
| # run: sudo apt-get install -y tabix | |
| # - name: Run cwl test from base repo | |
| # run: | | |
| # cd cwl_tests/ | |
| # bash run_tests.sh |