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Making the next major release
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egonw committed Sep 13, 2018
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6,328 changes: 6,328 additions & 0 deletions external/aopo-slim.owl
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3,126 changes: 2,478 additions & 648 deletions external/bao-slim.owl
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82 changes: 42 additions & 40 deletions external/bfo-slim.owl
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<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.enanomapper.org/onto/external/bfo-slim.owl#"
xml:base="http://purl.enanomapper.org/onto/external/bfo-slim.owl"
<rdf:RDF xmlns="http://purl.enanomapper.net/onto/external/bfo-slim.owl#"
xml:base="http://purl.enanomapper.net/onto/external/bfo-slim.owl"
xmlns:pav="http://purl.org/pav/"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
Expand All @@ -12,59 +12,60 @@
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:foaf="http://xmlns.com/foaf/0.1/"
xmlns:dc="http://purl.org/dc/elements/1.1/">
<owl:Ontology rdf:about="http://purl.enanomapper.org/onto/external/bfo-slim.owl">
<owl:Ontology rdf:about="http://purl.enanomapper.net/onto/external/bfo-slim.owl">
<obo:IAO_0000116>BFO 2 Reference: BFO does not claim to be a complete coverage of all entities. It seeks only to provide coverage of those entities studied by empirical science together with those entities which affect or are involved in human activities such as data processing and planning – coverage that is sufficiently broad to provide assistance to those engaged in building domain ontologies for purposes of data annotation [17</obo:IAO_0000116>
<dc:contributor>Ron Rudnicki</dc:contributor>
<dc:contributor>Barry Smith</dc:contributor>
<dc:contributor>Larry Hunter</dc:contributor>
<dc:contributor>Werner Ceusters</dc:contributor>
<dc:contributor>Jonathan Bona</dc:contributor>
<dc:contributor>Robert Rovetto</dc:contributor>
<dc:contributor>Albert Goldfain</dc:contributor>
<dc:contributor>Melanie Courtot</dc:contributor>
<obo:IAO_0000116>BFO 2 Reference: BFO’s treatment of continuants and occurrents – as also its treatment of regions, rests on a dichotomy between space and time, and on the view that there are two perspectives on reality – earlier called the ‘SNAP’ and ‘SPAN’ perspectives, both of which are essential to the non-reductionist representation of reality as we understand it from the best available science [30</obo:IAO_0000116>
<obo:IAO_0000116>BFO 2 Reference: For both terms and relational expressions in BFO, we distinguish between primitive and defined. ‘Entity’ is an example of one such primitive term. Primitive terms in a highest-level ontology such as BFO are terms that are so basic to our understanding of reality that there is no way of defining them in a non-circular fashion. For these, therefore, we can provide only elucidations, supplemented by examples and by axioms.</obo:IAO_0000116>
<dc:contributor>Alan Ruttenberg</dc:contributor>
<rdfs:seeAlso rdf:resource="http://groups.google.com/group/bfo-owl-devel"/>
<dc:contributor>Albert Goldfain</dc:contributor>
<dc:contributor>Barry Smith</dc:contributor>
<dc:contributor>Bill Duncan</dc:contributor>
<dc:contributor>Bjoern Peters</dc:contributor>
<dc:contributor>Chris Mungall</dc:contributor>
<dc:license rdf:resource="http://creativecommons.org/licenses/by/3.0/"/>
<rdfs:seeAlso rdf:resource="http://bfo.googlecode.com/svn/trunk/src/tools/"/>
<dc:contributor>David Osumi-Sutherland</dc:contributor>
<rdfs:isDefinedBy rdf:resource="http://bfo.googlecode.com/svn/trunk/src/ontology/owl-group/specification/"/>
<dc:contributor>James A. Overton</dc:contributor>
<foaf:mbox rdf:resource="mailto:bfo-owl-devel@googlegroups.com"/>
<dc:contributor>Fabian Neuhaus</dc:contributor>
<obo:IAO_0000116>BFO 2 Reference: BFO’s treatment of continuants and occurrents – as also its treatment of regions, rests on a dichotomy between space and time, and on the view that there are two perspectives on reality – earlier called the ‘SNAP’ and ‘SPAN’ perspectives, both of which are essential to the non-reductionist representation of reality as we understand it from the best available science [30</obo:IAO_0000116>
<foaf:homepage rdf:resource="http://code.google.com/p/bfo/"/>
<obo:IAO_0000116>BFO 2 Reference: For both terms and relational expressions in BFO, we distinguish between primitive and defined. ‘Entity’ is an example of one such primitive term. Primitive terms in a highest-level ontology such as BFO are terms that are so basic to our understanding of reality that there is no way of defining them in a non-circular fashion. For these, therefore, we can provide only elucidations, supplemented by examples and by axioms.</obo:IAO_0000116>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/bfo/dev/owl"/>
<dc:contributor>Mathias Brochhausen</dc:contributor>
<dc:contributor>Leonard Jacuzzo</dc:contributor>
<dc:contributor>James A. Overton</dc:contributor>
<dc:contributor>Janna Hastings</dc:contributor>
<dc:contributor>Jie Zheng</dc:contributor>
<dc:contributor>Jonathan Bona</dc:contributor>
<dc:contributor>Larry Hunter</dc:contributor>
<dc:contributor>Leonard Jacuzzo</dc:contributor>
<dc:contributor>Ludger Jansen</dc:contributor>
<dc:contributor>Mark Ressler</dc:contributor>
<dc:contributor>Mathias Brochhausen</dc:contributor>
<dc:contributor>Mauricio Almeida</dc:contributor>
<dc:contributor>Melanie Courtot</dc:contributor>
<dc:contributor>Pierre Grenon</dc:contributor>
<dc:contributor>Randall Dipert</dc:contributor>
<dc:contributor>Robert Rovetto</dc:contributor>
<dc:contributor>Ron Rudnicki</dc:contributor>
<dc:contributor>Stefan Schulz</dc:contributor>
<foaf:homepage rdf:resource="http://ifomis.org/bfo"/>
<rdfs:seeAlso rdf:resource="http://groups.google.com/group/bfo-devel"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo/2014-05-03/ReleaseNotes"/>
<dc:contributor>Thomas Bittner</dc:contributor>
<dc:contributor>Werner Ceusters</dc:contributor>
<dc:license rdf:resource="http://creativecommons.org/licenses/by/3.0/"/>
<pav:importedFrom rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://purl.obolibrary.org/obo/bfo/classes-only.owl</pav:importedFrom>
<oboInOwl:auto-generated-by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Slimmer</oboInOwl:auto-generated-by>
<dc:contributor>Bjoern Peters</dc:contributor>
<dc:contributor>Bill Duncan</dc:contributor>
<dc:contributor>Ludger Jansen</dc:contributor>
<dc:contributor>Thomas Bittner</dc:contributor>
<rdfs:seeAlso rdf:resource="http://groups.google.com/group/bfo-discuss"/>
<dc:contributor>Jie Zheng</dc:contributor>
<dc:contributor>Mauricio Almeida</dc:contributor>
<dc:contributor>Mark Ressler</dc:contributor>
<rdfs:comment xml:lang="en">This is an early version of BFO version 2 and has not yet been extensively reviewed by the project team members. Please see the project site http://code.google.com/p/bfo/ , the bfo2 owl discussion group http://groups.google.com/group/bfo-owl-devel , the bfo2 discussion group http://groups.google.com/group/bfo-devel, the tracking google doc http://goo.gl/IlrEE, and the current version of the bfo2 reference http://purl.obolibrary.org/obo/bfo/dev/bfo2-reference.docx . This ontology is generated from a specification at http://bfo.googlecode.com/svn/trunk/src/ontology/owl-group/specification/ and with the code that generates the OWL version in http://bfo.googlecode.com/svn/trunk/src/tools/. A very early version of BFO version 2 in CLIF is at http://purl.obolibrary.org/obo/bfo/dev/bfo.clif</rdfs:comment>
<oboInOwl:date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2017-05-21 06:34:15</oboInOwl:date>
<oboInOwl:date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2018-09-13 20:20:29</oboInOwl:date>
<rdfs:comment xml:lang="en">The http://purl.obolibary.org/obo/bfo/classes-only.owl variant of BFO (&quot;bfo_classes_only.owl&quot;) includes only the class hierarchy and annotations from the full OWL version of BFO 2: http://purl.obolibary.org/obo/bfo.owl (&quot;bfo.owl&quot;). There are no object properties or logical axioms that use the object properties in bfo_classes_only.owl. As the logical axioms in the bfo_classes_only.owl variant are limited to subclass and disjoint assertions they are much weaker than the logical axioms in bfo.owl.

If you plan to use the relations that define BFO 2, you should import bfo.owl instead of bfo_classes_only.owl. To the extent that the relations are used without importing bfo.owl, be mindful that they should be used in a manner consistent with their use in bfo.owl. Otherwise if your ontology is imported by a another ontology that imports bfo.owl there may be inconsistencies.

See the BFO 2 release notes for further information about BFO 2. Please note that the current release of bfo.owl uses temporal relations when the subject or object is a continuant, a major change from BFO 1.</rdfs:comment>
<dc:contributor>Pierre Grenon</dc:contributor>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo/dev/bfo.clif"/>
<rdfs:comment xml:lang="en">This is an early version of BFO version 2 and has not yet been extensively reviewed by the project team members. Please see the project site http://code.google.com/p/bfo/ , the bfo2 owl discussion group http://groups.google.com/group/bfo-owl-devel , the bfo2 discussion group http://groups.google.com/group/bfo-devel, the tracking google doc http://goo.gl/IlrEE, and the current version of the bfo2 reference http://purl.obolibrary.org/obo/bfo/dev/bfo2-reference.docx . This ontology is generated from a specification at http://bfo.googlecode.com/svn/trunk/src/ontology/owl-group/specification/ and with the code that generates the OWL version in http://bfo.googlecode.com/svn/trunk/src/tools/. A very early version of BFO version 2 in CLIF is at http://purl.obolibrary.org/obo/bfo/dev/bfo.clif</rdfs:comment>
<rdfs:isDefinedBy rdf:resource="http://bfo.googlecode.com/svn/trunk/src/ontology/owl-group/specification/"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo/2012-07-20/Reference"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo/2014-05-03/ReleaseNotes"/>
<rdfs:isDefinedBy rdf:resource="http://purl.obolibrary.org/obo/bfo/dev/bfo.clif"/>
<rdfs:seeAlso rdf:resource="http://bfo.googlecode.com/svn/trunk/src/tools/"/>
<rdfs:seeAlso rdf:resource="http://groups.google.com/group/bfo-devel"/>
<rdfs:seeAlso rdf:resource="http://groups.google.com/group/bfo-discuss"/>
<rdfs:seeAlso rdf:resource="http://groups.google.com/group/bfo-owl-devel"/>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/bfo/dev/owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
<foaf:homepage rdf:resource="http://code.google.com/p/bfo/"/>
<foaf:homepage rdf:resource="http://ifomis.org/bfo"/>
<foaf:mbox rdf:resource="mailto:bfo-owl-devel@googlegroups.com"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This SLIM file was generated automatically by the eNanoMapper Slimmer software library. For more information see http://github.com/enanomapper/slimmer.</owl:versionInfo>
</owl:Ontology>


Expand Down Expand Up @@ -548,5 +549,6 @@ See the BFO 2 release notes for further information about BFO 2. Please note tha



<!-- Generated by the OWL API (version 4.1.0) https://github.com/owlcs/owlapi -->
<!-- Generated by the OWL API (version 4.3.2) https://github.com/owlcs/owlapi -->


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