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@epiverse-trace

Epiverse-TRACE

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  1. epiparameter epiparameter Public

    R package with library of epidemiological parameters for infectious diseases and functions and classes for working with parameters

    R 32 11

  2. sivirep sivirep Public

    Data Wrangling and Automated Reports from 'SIVIGILA' source

    R 29 3

  3. serofoi serofoi Public

    Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies

    R 17 4

  4. vaccineff vaccineff Public

    R package with tools for estimating vaccine effectiveness and vaccine related metrics

    R 14 2

  5. cfr cfr Public

    R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series

    R 13 3

  6. finalsize finalsize Public

    R package to calculate the final size of an SIR epidemic in populations with heterogeneity in social contacts and disease susceptibility

    R 11 7

Repositories

Showing 10 of 58 repositories
  • epiparameter Public

    R package with library of epidemiological parameters for infectious diseases and functions and classes for working with parameters

    epiverse-trace/epiparameter’s past year of commit activity
    R 32 11 55 (3 issues need help) 3 Updated Sep 19, 2024
  • cleanepi Public

    R package to clean and standardize epidemiological data

    epiverse-trace/cleanepi’s past year of commit activity
    R 8 3 23 6 Updated Sep 19, 2024
  • shinyapps-tracelac Public
    epiverse-trace/shinyapps-tracelac’s past year of commit activity
    R 1 0 0 0 Updated Sep 19, 2024
  • serofoi Public

    Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies

    epiverse-trace/serofoi’s past year of commit activity
    R 17 4 30 4 Updated Sep 19, 2024
  • readepi Public

    An R package for importing epi data into R.

    epiverse-trace/readepi’s past year of commit activity
    R 6 5 11 1 Updated Sep 19, 2024
  • .github Public
    epiverse-trace/.github’s past year of commit activity
    1 1 4 0 Updated Sep 19, 2024
  • epi-training-kit Public template

    An e-learning strategy for training on analysis, modelling and response to outbreaks and epidemics in Latin-America and the Caribbean

    epiverse-trace/epi-training-kit’s past year of commit activity
    HTML 6 CC-BY-4.0 1 1 0 Updated Sep 18, 2024
  • epiverse-trace.github.io Public

    Technical blog of the Epiverse-TRACE project, where we share opinions and investigations in R package development, or scientific software development more generally

    epiverse-trace/epiverse-trace.github.io’s past year of commit activity
    R 3 3 9 (2 issues need help) 4 Updated Sep 18, 2024
  • sivirep Public

    Data Wrangling and Automated Reports from 'SIVIGILA' source

    epiverse-trace/sivirep’s past year of commit activity
    R 29 3 12 3 Updated Sep 18, 2024
  • vaccineff Public

    R package with tools for estimating vaccine effectiveness and vaccine related metrics

    epiverse-trace/vaccineff’s past year of commit activity
    R 14 2 1 2 Updated Sep 18, 2024
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