Skip to content

Commit

Permalink
Create anotherpage5.md
Browse files Browse the repository at this point in the history
  • Loading branch information
@ermismd
ermismd authored Sep 2, 2023
1 parent ba34b1f commit f0a1c73
Showing 1 changed file with 333 additions and 0 deletions.
333 changes: 333 additions & 0 deletions anotherpage5.md
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,333 @@
## WEEK 15 & WEEK 16


1. MGGCytoPanel serves as the skeletal structure for the Cytopanel (East).
2. AbstractMGGPanel: Abstract class to provide a basis for the data filtering functionalities.

* * *



<html>
<head>
<style>
h1 {
font-size: 18px; /* Adjust the font size for h1 as needed */
}
h2 {
font-size: 18px; /* Adjust the font size for h2 as needed */
}
.panel {
display: none;
background-color: #f1f1f1;
padding: 10px;
margin-top: 10px;
font-size: 10px; /* Increase the font size as needed */
width: 800px; /* Increase the width as needed */
}
</style>
</head>
<body>
<h1>MGGCytoPanel</h1>
<button onclick="MGGCytoPanel()">Expand</button>
<div class="panel" id="MGGCytoPanel">
<pre>
public class MGGCytoPanel extends JPanel implements CytoPanelComponent2, SetCurrentNetworkListener, SelectedNodesAndEdgesListener {

final MGGManager manager;

// Define new colors
public static final Color[] MY_COLORS = new Color[] { Color.BLACK, Color.RED, Color.BLUE, Color.YELLOW };
// Create a Font object
private static final Font myFont = new Font("Arial", Font.PLAIN, 16);
private JTabbedPane tabs;
//private StringNodePanel nodePanel;
private MGGEdgePanel edgePanel;
private boolean registered = false;
private static final Icon icon = new TextIcon(new String[] { "MGG" }, new Font[] { myFont }, MY_COLORS, 16, 16);

public MGGCytoPanel(final MGGManager manager) {
this.manager = manager;
this.setLayout(new BorderLayout());
tabs = new JTabbedPane(JTabbedPane.BOTTOM);
//nodePanel = new StringNodePanel(manager);
//tabs.add("Nodes", nodePanel);
edgePanel = new MGGEdgePanel(manager);
tabs.add("Edges", edgePanel);
this.add(tabs, BorderLayout.CENTER);
manager.setCytoPanel(this);
manager.registerService(this, SetCurrentNetworkListener.class, new Properties());
manager.registerService(this, SelectedNodesAndEdgesListener.class, new Properties());
registered = true;
revalidate();
repaint();
}


public void showCytoPanel() {
// System.out.println("show panel");
CySwingApplication swingApplication = manager.getService(CySwingApplication.class);
CytoPanel cytoPanel = swingApplication.getCytoPanel(CytoPanelName.EAST);
if (!registered) {
manager.registerService(this, CytoPanelComponent.class, new Properties());
registered = true;
}
if (cytoPanel.getState() == CytoPanelState.HIDE)
cytoPanel.setState(CytoPanelState.DOCK);

// Tell tabs
//nodePanel.networkChanged(manager.getCurrentNetwork());
edgePanel.networkChanged(manager.getCurrentNetwork());
}

public void reinitCytoPanel() {
CySwingApplication swingApplication = manager.getService(CySwingApplication.class);
CytoPanel cytoPanel = swingApplication.getCytoPanel(CytoPanelName.EAST);
if (!registered) {
manager.registerService(this, CytoPanelComponent.class, new Properties());
registered = true;
}
if (cytoPanel.getState() == CytoPanelState.HIDE)
cytoPanel.setState(CytoPanelState.DOCK);

// Tell tabs & remove/undo filters
CyNetwork current = manager.getCurrentNetwork();
//nodePanel.removeFilters(current);
//nodePanel.undoFilters();
//nodePanel.networkChanged(current);
edgePanel.removeFilters(current);
edgePanel.undoFilters();
edgePanel.networkChanged(current);
}

public void hideCytoPanel() {
manager.unregisterService(this, CytoPanelComponent.class);
registered = false;
}

public String getIdentifier() {
return "be.kuleuven.mgG.internal.MGG";
}

public Component getComponent() {
// TODO Auto-generated method stub
return this;
}

public CytoPanelName getCytoPanelName() {
// TODO Auto-generated method stub
return CytoPanelName.EAST;
}

public Icon getIcon() {
return icon;
}

public String getTitle() {
return "MGG";
}

public void updateControls() {
//nodePanel.updateControls();
edgePanel.updateScore();
//edgePanel.updateSubPanel();
}

@Override
public void handleEvent(SelectedNodesAndEdgesEvent event) {
if (!registered) return;
// Pass selected nodes to nodeTab
//nodePanel.selectedNodes(event.getSelectedNodes());
// Pass selected edges to edgeTab
edgePanel.selectedEdges(event.getSelectedEdges());
}

@Override
public void handleEvent(SetCurrentNetworkEvent event) {
CyNetwork network = event.getNetwork();

if (network == null) {
hideCytoPanel();
return;
}

// Check for the existence of the "flashweave-score" attribute on edges
boolean hasFlashweaveScore = network.getRow(network).get("flashweave-score",Double.class) != null;

/*
* // Further checks can be added to see if the flashweave-scores are unique,
* different, etc. // For example: Set<Double> uniqueScores = new HashSet<>();
* boolean hasDifferentScores = false; if (hasFlashweaveScore) { for (CyEdge
* edge : network.getEdgeList()) { Double score =
* network.getRow(edge).get("flashweave-score", Double.class); if (score !=
* null) { if (uniqueScores.contains(score)) { hasDifferentScores = true; break;
* } uniqueScores.add(score); } } }
*/

// Based on the above checks, decide whether to show the CytoPanel
if (hasFlashweaveScore) {
if (!registered) {
showCytoPanel();
}

// Inform the tabs
// nodePanel.networkChanged(network);
edgePanel.networkChanged(network);
} else {
hideCytoPanel();
}


}}


</pre>
</div>


<h2>AbstractMggPanel</h2>
<button onclick="AbstractMggPanel()">Expand</button>
<div class="panel" id="AbstractMggPanel">
<pre>

public abstract class AbstractMggPanel extends JPanel {
protected final MGGManager manager;
protected final OpenBrowser openBrowser;
protected final Font iconFont;
protected final Font labelFont;
protected final Font textFont;
protected CyNetwork currentNetwork;
protected Map<CyNetwork, Map<String,Map<String, Double>>> filters;
public AbstractMggPanel(final MGGManager manager) {
this.manager = manager;
this.openBrowser = manager.getService(OpenBrowser.class);
this.currentNetwork = manager.getCurrentNetwork();
IconManager iconManager = manager.getService(IconManager.class);
iconFont = iconManager.getIconFont(17.0f);
labelFont = new Font("SansSerif", Font.BOLD, 10);
textFont = new Font("SansSerif", Font.PLAIN, 10);
filters = new HashMap<>();
filters.put(currentNetwork, new HashMap<>());
}
abstract void doFilter(String type);
abstract void undoFilters();
abstract double initFilter(String type, String text);
protected JComponent createFilterSlider(String type, String text, CyNetwork network, boolean labels, double max) {
double value = 0.0;
if (filters.containsKey(network) &&
filters.get(network).containsKey(type) &&
filters.get(network).get(type).containsKey(text)) {
value = filters.get(network).get(type).get(text);
// System.out.println("value = "+value);
} else {
value = initFilter(type, text);
}
Box box = Box.createHorizontalBox();
if (labels) {
JLabel label = new JLabel(text);
label.setFont(labelFont);
label.setPreferredSize(new Dimension(100,20));
box.add(Box.createRigidArea(new Dimension(10,0)));
box.add(label);
box.add(Box.createHorizontalGlue());
}
JSlider slider;
slider = new JSlider(0,(int)max,(int)(value*100));
slider.setToolTipText("Filter ranges between 0.0 and " + max/100);
slider.setPreferredSize(new Dimension(150,20));
box.add(slider);
// box.add(Box.createHorizontalGlue());
JTextField textField;
textField = new JTextField(String.format("%.2f",value),4);
textField.setPreferredSize(new Dimension(30,20));
textField.setMaximumSize(new Dimension(30,20));
textField.setFont(textFont);
box.add(textField);
// Hook it up
addChangeListeners(type, text, slider, textField, max);
box.setAlignmentX(Component.LEFT_ALIGNMENT);
return box;
}
protected void addChangeListeners(String type, String label, JSlider slider,
JTextField textField, double max) {
slider.addChangeListener(new ChangeListener() {
public void stateChanged(ChangeEvent e) {
JSlider sl = (JSlider)e.getSource();
int value = sl.getValue();
double v = ((double)value)/100.0;
textField.setText(String.format("%.2f",v));
addFilter(type, label, v);
doFilter(type);
}
});
textField.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent e) {
JTextField field = (JTextField)e.getSource();
String text = field.getText();
slider.setValue((int)(Double.parseDouble(text)*100.0));
}
});
}
protected void addFilter(String type, String label, double value) {
Map<String,Double> filter = filters.get(currentNetwork).get(type);
filter.put(label, value);
if (value == 0)
filter.remove(label);
}
protected void removeFilters(CyNetwork network) {
if (network != null && filters.containsKey(network))
filters.remove(network);
}

}


</pre>
</div>

<script>
function MGGCytoPanel() {
var panel = document.getElementById("MGGCytoPanel");
if (panel.style.display === "none") {
panel.style.display = "block";
} else {
panel.style.display = "none";
}
}

function AbstractMggPanel() {
var panel = document.getElementById("AbstractMggPanel");
if (panel.style.display === "none") {
panel.style.display = "block";
} else {
panel.style.display = "none";
}
}

</script>
</body>
</html>



<br> <!-- Add an empty line -->



[back](./)

0 comments on commit f0a1c73

Please sign in to comment.