Restore test; upstream pathway available again

eweitz · Nov 13, 2024 · 61eb68a · 61eb68a
1 parent 677360d
commit 61eb68a
Showing 1 changed file with 53 additions and 55 deletions.
diff --git a/test/online/related-genes.test.js b/test/online/related-genes.test.js
@@ -147,66 +147,64 @@ describe('Ideogram related genes kit', function() {
     const ideogram = Ideogram.initRelatedGenes(config);
   });
 
-  // Uncomment this test after 2024-11-12.
-  // The needed pathway was unapproved, now it is approved.
-  // it('handles pathway genes', done => {
+  it('handles pathway genes', done => {
 
-  //   async function callback() {
-  //     await ideogram.plotRelatedGenes('RAD51');
-
-  //     setTimeout(async function() {
-
-  //       const rad54lLabel = document.querySelector('#ideogramLabel__c0_a0');
-  //       rad54lLabel.dispatchEvent(new Event('mouseover'));
-  //       const pathwayLink = document.querySelector('.ideo-pathway-link');
-  //       const pathwayName = 'Integrated breast cancer pathway';
-  //       assert.equal(pathwayLink.textContent, pathwayName);
-
-  //       // Test interaction gene summary processing, where one gene
-  //       // is part of a WikiPathways group
-  //       const tooltip = document.querySelector('#_ideogramTooltip');
-  //       assert.include(tooltip.textContent, 'Stimulated by RAD51 in');
-
-  //       setTimeout(async function() {
-  //         pathwayLink.dispatchEvent(new Event('click'));
-
-  //         setTimeout(async function() {
-  //           const brca2Annot =
-  //             document.querySelector('#chr13-9606 .annot path');
-  //           const brca2Color = brca2Annot.getAttribute('fill');
-  //           assert.equal(brca2Color, 'green');
-  //           done();
-  //         }, 2000);
-  //       }, 2000);
-  //     }, 5000);
-  //   }
+    async function callback() {
+      await ideogram.plotRelatedGenes('RAD51');
 
-  //   function onClickAnnot(annot) {
-  //     ideogram.plotRelatedGenes(annot.name);
-  //   }
+      setTimeout(async function() {
 
-  //   function onWillShowAnnotTooltip(annot) {
-  //     const ideo = this;
-  //     const analytics = ideo.getTooltipAnalytics(annot, ideo);
-  //     assert.equal(analytics.tooltipRelatedType, 'interacting');
-  //     return annot;
-  //   }
+        const rad54lLabel = document.querySelector('#ideogramLabel__c0_a0');
+        rad54lLabel.dispatchEvent(new Event('mouseover'));
+        const pathwayLink = document.querySelector('.ideo-pathway-link');
+        const pathwayName = 'Integrated breast cancer pathway';
+        assert.equal(pathwayLink.textContent, pathwayName);
 
-  //   var config = {
-  //     organism: 'Homo sapiens', // Also tests standard, non-slugged name
-  //     chrWidth: 8,
-  //     chrHeight: 90,
-  //     chrLabelSize: 10,
-  //     annotationHeight: 5,
-  //     onLoad: callback,
-  //     dataDir: '/dist/data/bands/native/',
-  //     cacheDir: '/dist/data/cache/',
-  //     onClickAnnot,
-  //     onWillShowAnnotTooltip
-  //   };
+        // Test interaction gene summary processing, where one gene
+        // is part of a WikiPathways group
+        const tooltip = document.querySelector('#_ideogramTooltip');
+        assert.include(tooltip.textContent, 'Stimulated by RAD51 in');
 
-  //   const ideogram = Ideogram.initRelatedGenes(config);
-  // });
+        setTimeout(async function() {
+          pathwayLink.dispatchEvent(new Event('click'));
+
+          setTimeout(async function() {
+            const brca2Annot =
+              document.querySelector('#chr13-9606 .annot path');
+            const brca2Color = brca2Annot.getAttribute('fill');
+            assert.equal(brca2Color, 'green');
+            done();
+          }, 2000);
+        }, 2000);
+      }, 5000);
+    }
+
+    function onClickAnnot(annot) {
+      ideogram.plotRelatedGenes(annot.name);
+    }
+
+    function onWillShowAnnotTooltip(annot) {
+      const ideo = this;
+      const analytics = ideo.getTooltipAnalytics(annot, ideo);
+      assert.equal(analytics.tooltipRelatedType, 'interacting');
+      return annot;
+    }
+
+    var config = {
+      organism: 'Homo sapiens', // Also tests standard, non-slugged name
+      chrWidth: 8,
+      chrHeight: 90,
+      chrLabelSize: 10,
+      annotationHeight: 5,
+      onLoad: callback,
+      dataDir: '/dist/data/bands/native/',
+      cacheDir: '/dist/data/cache/',
+      onClickAnnot,
+      onWillShowAnnotTooltip
+    };
+
+    const ideogram = Ideogram.initRelatedGenes(config);
+  });
 
   // // TODO: Restore this
   // it('handles gene with paralogs but no interacting genes', done => {