Refactor CI workflow to use conditional activation for virtual enviro… #638
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| # This file was originally generated by maturin v0.14.17 | |
| name: CI3 | |
| on: | |
| push: | |
| schedule: | |
| - cron: '0 0 1 * *' | |
| pull_request: | |
| workflow_dispatch: | |
| env: | |
| CARGO_TERM_COLOR: always | |
| permissions: | |
| contents: read | |
| jobs: | |
| test_rust: | |
| name: Test Rust | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-13, macos-14] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up Rust | |
| uses: actions-rs/toolchain@v1 | |
| with: | |
| toolchain: 1.81 | |
| override: true | |
| - name: Install Clippy (pinned version for this pinned version of Rust) | |
| run: rustup component add clippy | |
| - name: Run Clippy (strict for this pinned version of Rust) | |
| run: cargo clippy --all-targets --all-features -- -D warnings | |
| - name: Set up Rust (Latest Stable for Tests) | |
| uses: actions-rs/toolchain@v1 | |
| with: | |
| toolchain: stable | |
| override: true | |
| - name: Install Clippy (Latest) | |
| run: rustup component add clippy | |
| - name: Run Clippy (lenient for latest version) | |
| run: cargo clippy --all-targets --all-features -- -A warnings || echo "Clippy warnings from the latest version" | |
| - name: Test Rust no-default-features | |
| run: cargo test --verbose --no-default-features | |
| - name: Test Rust default features | |
| run: cargo test --verbose | |
| macos: | |
| runs-on: macos-13 | |
| strategy: | |
| matrix: | |
| target: [x86_64, aarch64] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: | | |
| 3.10 | |
| 3.11 | |
| 3.12 | |
| 3.13 | |
| - name: Build wheels | |
| uses: PyO3/maturin-action@v1 | |
| with: | |
| target: ${{ matrix.target }} | |
| args: --release --out dist --find-interpreter | |
| - name: Upload wheels | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: wheels | |
| path: dist | |
| linux: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| target: [x86_64, aarch64] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: | | |
| 3.10 | |
| 3.11 | |
| 3.12 | |
| 3.13 | |
| - name: Install cross-compilation dependencies | |
| if: matrix.target == 'aarch64' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y gcc-aarch64-linux-gnu | |
| - name: Build wheels for aarch64 | |
| if: matrix.target == 'aarch64' | |
| env: | |
| CC: aarch64-linux-gnu-gcc | |
| CFLAGS: -march=armv8-a -D__ARM_ARCH=8 | |
| uses: PyO3/maturin-action@v1 | |
| with: | |
| target: ${{ matrix.target }} | |
| args: --release --out dist -i python3.10 -i python3.11 -i python3.12 -i python3.13 | |
| manylinux: auto | |
| - name: Build wheels for x86_64 | |
| if: matrix.target == 'x86_64' | |
| uses: PyO3/maturin-action@v1 | |
| with: | |
| target: ${{ matrix.target }} | |
| args: --release --out dist -i -i python3.10 -i python3.11 -i python3.12 -i python3.13 | |
| manylinux: auto | |
| - name: Upload wheels | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: wheels | |
| path: dist | |
| windows: | |
| runs-on: windows-latest | |
| strategy: | |
| matrix: | |
| target: [x64] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: | | |
| 3.10 | |
| 3.11 | |
| 3.12 | |
| 3.13 | |
| architecture: ${{ matrix.target }} | |
| - name: Build wheels | |
| uses: PyO3/maturin-action@v1 | |
| with: | |
| target: ${{ matrix.target }} | |
| args: --release --out dist --find-interpreter | |
| - name: Upload wheels | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: wheels | |
| path: dist | |
| sdist: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Build sdist | |
| uses: PyO3/maturin-action@v1 | |
| with: | |
| command: sdist | |
| args: --out dist | |
| - name: Upload sdist | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: wheels | |
| path: dist | |
| test: | |
| name: Test Python | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12", "3.13"] | |
| os: [ubuntu-latest, windows-latest, macos-13, macos-14] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Install the latest version of uv | |
| uses: astral-sh/setup-uv@v3 | |
| - name: Install Python ${{ matrix.python-version }} | |
| run: uv python install ${{ matrix.python-version }} | |
| - name: Setup, Lint, and Test Python | |
| shell: bash | |
| run: | | |
| cd bed_reader | |
| uvx ruff@0.6.9 check . | |
| uvx ruff@latest check . || echo "Ignoring warnings from the latest version of ruff" | |
| uv sync --extra min_dev | |
| if [ "$RUNNER_OS" = "Windows" ]; then | |
| .\\..\\.venv\\Scripts\\activate | |
| else | |
| source ../.venv/bin/activate | |
| fi | |
| pytest tests/test_opt_dep.py | |
| uv sync --extra dev --extra sparse --extra samples | |
| if [ "$RUNNER_OS" = "Windows" ]; then | |
| .\\..\\.venv\\Scripts\\activate | |
| else | |
| source ../.venv/bin/activate | |
| fi | |
| pytest . |