R-CMD-check #601
Annotations
2 errors and 22 warnings
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Set up R and install BiocManager
No such keg: /opt/homebrew/Cellar/pkg-config@0.29.2
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Build, Install, Check
Process completed with exit code 1.
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Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v1. Please update your workflow to use the latest version of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-09-16-notice-of-upcoming-deprecations-and-changes-in-github-actions-services/
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Set up R and install BiocManager
pkgconf 2.3.0_1 is already installed and up-to-date.
To reinstall 2.3.0_1, run:
brew reinstall pkgconf
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Set up R and install BiocManager
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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Set up R and install BiocManager
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Set up R and install BiocManager
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
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Set up R and install BiocManager
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Install dependencies
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
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Install dependencies
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Install dependencies
Unused dummy argument ‘timed’ at (1) [-Wunused-dummy-argument]
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Install dependencies
Unused dummy argument ‘timed’ at (1) [-Wunused-dummy-argument]
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Install dependencies
Unused dummy argument ‘timed’ at (1) [-Wunused-dummy-argument]
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Install dependencies
Unused dummy argument ‘timed’ at (1) [-Wunused-dummy-argument]
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Install dependencies
Possible change of value in conversion from REAL(4) to INTEGER(4) at (1) [-Wconversion]
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Install dependencies
Unused dummy argument ‘nofsub’ at (1) [-Wunused-dummy-argument]
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Install dependencies
Unused dummy argument ‘etpar’ at (1) [-Wunused-dummy-argument]
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Install dependencies
Unused dummy argument ‘adjncy’ at (1) [-Wunused-dummy-argument]
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Install remotes
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Install system dependencies (macOS)
cairo 1.18.2 is already installed and up-to-date.
To reinstall 1.18.2, run:
brew reinstall cairo
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Install system dependencies (macOS)
macOS's Gatekeeper has been disabled for this Cask
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Install system dependencies (macOS)
harfbuzz 10.1.0 is already installed and up-to-date.
To reinstall 10.1.0, run:
brew reinstall harfbuzz
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Install system dependencies (macOS)
fribidi 1.0.16 is already installed and up-to-date.
To reinstall 1.0.16, run:
brew reinstall fribidi
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Upload check results
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