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R-CMD-check

R-CMD-check #609

Triggered via schedule January 24, 2025 08:01
Status Failure
Total duration 21m 57s
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R-CMD-check.yaml

on: schedule
Matrix: R-CMD-check
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3 errors and 26 warnings
macOS-latest (devel - )
No such keg: /opt/homebrew/Cellar/pkg-config@0.29.2
macOS-latest (devel - )
Process completed with exit code 1.
ubuntu-latest ( - bioconductor/bioconductor_docker:devel)
Process completed with exit code 1.
macOS-latest (devel - )
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v1. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
ubuntu-latest ( - bioconductor/bioconductor_docker:devel)
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v1. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
ubuntu-latest (devel - )
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v1. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
windows-latest (devel - )
Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v1. Please update your workflow to use either v3 or v4 of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-12-05-notice-of-upcoming-releases-and-breaking-changes-for-github-actions/#actions-cache-v1-v2-and-actions-toolkit-cache-package-closing-down
macOS-latest (devel - )
pkgconf 2.3.0_1 is already installed and up-to-date. To reinstall 2.3.0_1, run: brew reinstall pkgconf
macOS-latest (devel - )
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated dependents or dependents with broken linkage!
macOS-latest (devel - )
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel - )
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (devel - )
Unused dummy argument ‘itry’ at (1) [-Wunused-dummy-argument]
macOS-latest (devel - )
Unused variable ‘t4’ declared at (1) [-Wunused-variable]
macOS-latest (devel - )
Unused variable ‘t5’ declared at (1) [-Wunused-variable]
macOS-latest (devel - )
‘t2’ may be used uninitialized [-Wmaybe-uninitialized]
macOS-latest (devel - )
‘i2’ may be used uninitialized [-Wmaybe-uninitialized]
macOS-latest (devel - )
Unused dummy argument ‘a’ at (1) [-Wunused-dummy-argument]
macOS-latest (devel - )
Unused variable ‘i’ declared at (1) [-Wunused-variable]
macOS-latest (devel - )
Unused dummy argument ‘idigit’ at (1) [-Wunused-dummy-argument]
macOS-latest (devel - )
Unused dummy argument ‘ifmt’ at (1) [-Wunused-dummy-argument]
macOS-latest (devel - )
cairo 1.18.2 is already installed and up-to-date. To reinstall 1.18.2, run: brew reinstall cairo
macOS-latest (devel - )
harfbuzz 10.2.0 is already installed and up-to-date. To reinstall 10.2.0, run: brew reinstall harfbuzz
macOS-latest (devel - )
fribidi 1.0.16 is already installed and up-to-date. To reinstall 1.0.16, run: brew reinstall fribidi
macOS-latest (devel - )
No files were found with the provided path: check. No artifacts will be uploaded.
ubuntu-latest (devel - )
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
ubuntu-latest ( - bioconductor/bioconductor_docker:devel)
No files were found with the provided path: check. No artifacts will be uploaded.
windows-latest (devel - )
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/windows/contrib/4.5:
windows-latest (devel - )
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/windows/contrib/4.5:
windows-latest (devel - )
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/windows/contrib/4.5: