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๐Ÿ™‚
Hackin' around
๐Ÿ™‚
Hackin' around

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@seqan

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feldroop/README.md

Hey, I'm Felix. Welcome to my profile! ๐Ÿ ๐ŸŒณ

About me

I recently obtained my master's degree in bioinformatics from Freie Universitรคt Berlin and am now looking for a position as a software engineer. My academic studies primarily focused on algorithms and data structures. During my master's program, I also developed a passion for software engineering.

Skills

  • Design and implement algorithms and data structures for challenging technical problems ๐Ÿ’ก
  • Low-level, performance sensitive programming in C, C++ and Rust ๐Ÿฆ€
  • Data science, statistical analysis, machine learning, deep learning using R, Python, TensorFlow ๐Ÿ
  • Desktop GUI development using Java and JavaFX โ˜•
  • Parallel/distributed programming ๐Ÿ›ฐ๏ธ
  • Domain knowledge in bioinformatics and sequence analysis ๐Ÿงฌ

Notable projects

  • floxer - For my master's thesis, I developed a CLI tool that solves a common algorithmic problem in bioinformatics similar to sequence search. The tool is based on the FM-Index data structure and employs a task-based parallelism scheme. link
  • chopper - For my bachelor's thesis, I contributed to a tool that performs the preprocessing for a data structure based on Bloom Filters. I improved the algorithm by integrating set cardinality estimates from HyperLogLog sketches. link

What I'm currently doing

  • Sending out job applications ๐Ÿงพ
  • Creating my own personal website ๐ŸŒ
  • Taking online courses to improve my knowledge of web backend programming and gain an understanding of embedded development ๐Ÿ“ˆ
  • Working on sais-drum, my Rust implementation of the SAIS suffix array construction algorithm ๐Ÿค–

Pinned Loading

  1. floxer floxer Public

    FM-index longread PEX-based aligner

    C++ 4

  2. sais-drum sais-drum Public

    The SAIS suffix array construction algorithm in Rust

    Rust 1

  3. seqan/chopper seqan/chopper Public

    A tool for partitioning a set of sequences into similar batches.

    C++ 9 9