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10 changes: 4 additions & 6 deletions docs/02-background_lectures.md
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Expand Up @@ -6,11 +6,9 @@ This lecture module introduces epigenetics. It provides background on DNA packag

**Learning Objectives**

1. Answer what is epigenetics?
1. Learn about why we think about epigenetics as "Nature versus Nurture"
1. Answer "what is epigenetics?"
1. Learn to think of epigenetics as "Nature versus Nurture".

View the video here: https://drive.google.com/file/d/1Pmv1rgxhAuj28vNpuGYIFU6Wqj9swhoO/view?usp=sharing.
<iframe width="560" height="315" src="https://youtu.be/HE6M3ZX1VCw?si=dkhbrmkFHQO2tAYf" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>

<!-- <iframe width="560" height="315" src="https://drive.google.com/file/d/1k1ruxiIQGj7U2G2RzE7NooopmSAURG_Q/view?usp=sharing" title="YouTube video player" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe> -->

You can view and download the Google Slides [here](https://docs.google.com/presentation/d/1dDTvTYIen7xLn4fKuBTrbrjhlEt27MVDbslmnnwsTLA/edit?usp=sharing).
You can view and download the Google Slides [here](https://docs.google.com/presentation/d/1f4W8dbi28Rivl9n4vl8bz9GdjwK-s3LoLMm4RyMjcGk/edit?usp=sharing).
50 changes: 25 additions & 25 deletions docs/05-explore_the_epigenome.md

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18 changes: 11 additions & 7 deletions docs/404.html
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<meta http-equiv="X-UA-Compatible" content="IE=edge" />
<title>Page not found | Epigenetics on AnVIL: Nature vs Nurture</title>
<meta name="description" content="Introduction to Epigenetics" />
<meta name="generator" content="bookdown 0.24 and GitBook 2.6.7" />
<meta name="generator" content="bookdown 0.39.1 and GitBook 2.6.7" />

<meta property="og:title" content="Page not found | Epigenetics on AnVIL: Nature vs Nurture" />
<meta property="og:type" content="book" />


<meta property="og:description" content="Introduction to Epigenetics" />


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<meta name="date" content="2023-05-24" />
<meta name="date" content="2024-08-06" />

<meta name="viewport" content="width=device-width, initial-scale=1" />
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<link rel="shortcut icon" href="assets/AnVIL_style/anvil_favicon.ico" type="image/x-icon" />


<script src="libs/header-attrs-2.10/header-attrs.js"></script>
<script src="libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
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<link href="libs/gitbook-2.6.7/css/style.css" rel="stylesheet" />
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<link href="libs/anchor-sections-1.0.1/anchor-sections.css" rel="stylesheet" />
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<style type="text/css">

div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
</style>

<link rel="stylesheet" href="assets/style.css" type="text/css" />
<link rel="stylesheet" href="assets/AnVIL_style/anvil.css" type="text/css" />
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<p style="text-align:center;"> <a href="https://hutchdatascience.org/"> The Fred Hutch Data Science Lab </a></p>
<a href="https://hutchdatascience.org/" target="_blank"><img src="https://raw.githubusercontent.com/jhudsl/OTTR_Template/main/style-sets/fhdasl/copy_to_assets/big-dasl-stacked.png" style="width: 80%; padding-left: 34px; padding-top: 8px;"</a>
<p style="text-align:center; font-size: 12px;"> <a href="https://github.com/rstudio4edu/rstudio4edu-book/"> Style adapted from: rstudio4edu-book </a> <a href ="https://creativecommons.org/licenses/by/2.0/"> (CC-BY 2.0) </a></p>
<p style="padding-left: 40px;"><div class="trapezoid" style = "padding-left: 40px;"><span> <a href="https://forms.gle/AK12iVXTjsB7yCUUA"> Click here to provide feedback</a> <img src="assets/itcr_arrow.png" style=" width: 10%" ></span></div></p>
<p style="padding-left: 40px;"><div class="trapezoid" style = "padding-left: 40px;"><span><a href="https://docs.google.com/forms/d/e/1FAIpQLScrDVb_utm55pmb_SHx-RgELTEbCCWdLea0T3IzS0Oj00GE4w/viewform?usp=pp_url&entry.1565230805=Epigenetics+on+AnVIL:+Nature+vs+Nurture"> Click here to provide feedback</a> <img src="assets/itcr_arrow.png" style=" width: 10%" ></span></div></p>

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113 changes: 60 additions & 53 deletions docs/About.md
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Expand Up @@ -28,62 +28,69 @@ These credits are based on our [course contributors table guidelines](https://gi

```
## ─ Session info ───────────────────────────────────────────────────────────────
## setting value
## version R version 4.0.2 (2020-06-22)
## os Ubuntu 20.04.5 LTS
## system x86_64, linux-gnu
## ui X11
## language (EN)
## collate en_US.UTF-8
## ctype en_US.UTF-8
## tz Etc/UTC
## date 2023-05-24
## setting value
## version R version 4.3.2 (2023-10-31)
## os Ubuntu 22.04.4 LTS
## system x86_64, linux-gnu
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## language (EN)
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## tz Etc/UTC
## date 2024-08-06
## pandoc 3.1.1 @ /usr/local/bin/ (via rmarkdown)
##
## ─ Packages ───────────────────────────────────────────────────────────────────
## package * version date lib source
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## magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.0.2)
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## sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.0.3)
## stringi 1.5.3 2020-09-09 [1] RSPM (R 4.0.3)
## stringr 1.4.0 2019-02-10 [1] RSPM (R 4.0.3)
## testthat 3.0.1 2023-03-28 [1] Github (R-lib/testthat@e99155a)
## usethis 1.6.3 2020-09-17 [1] RSPM (R 4.0.2)
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## xfun 0.26 2023-03-28 [1] Github (yihui/xfun@74c2a66)
## yaml 2.2.1 2020-02-01 [1] RSPM (R 4.0.3)
## package * version date (UTC) lib source
## bookdown 0.39.1 2024-06-11 [1] Github (rstudio/bookdown@f244cf1)
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## cli 3.6.2 2023-12-11 [1] RSPM (R 4.3.0)
## devtools 2.4.5 2022-10-11 [1] RSPM (R 4.3.0)
## digest 0.6.34 2024-01-11 [1] RSPM (R 4.3.0)
## ellipsis 0.3.2 2021-04-29 [1] RSPM (R 4.3.0)
## evaluate 0.23 2023-11-01 [1] RSPM (R 4.3.0)
## fastmap 1.1.1 2023-02-24 [1] RSPM (R 4.3.0)
## fs 1.6.3 2023-07-20 [1] RSPM (R 4.3.0)
## glue 1.7.0 2024-01-09 [1] RSPM (R 4.3.0)
## htmltools 0.5.7 2023-11-03 [1] RSPM (R 4.3.0)
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## knitr 1.47.3 2024-06-11 [1] Github (yihui/knitr@e1edd34)
## later 1.3.2 2023-12-06 [1] RSPM (R 4.3.0)
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## magrittr 2.0.3 2022-03-30 [1] RSPM (R 4.3.0)
## memoise 2.0.1 2021-11-26 [1] RSPM (R 4.3.0)
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## R6 2.5.1 2021-08-19 [1] RSPM (R 4.3.0)
## Rcpp 1.0.12 2024-01-09 [1] RSPM (R 4.3.0)
## remotes 2.4.2.1 2023-07-18 [1] RSPM (R 4.3.0)
## rlang 1.1.4 2024-06-04 [1] CRAN (R 4.3.2)
## rmarkdown 2.27.1 2024-06-11 [1] Github (rstudio/rmarkdown@e1c93a9)
## sass 0.4.8 2023-12-06 [1] RSPM (R 4.3.0)
## sessioninfo 1.2.2 2021-12-06 [1] RSPM (R 4.3.0)
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## xtable 1.8-4 2019-04-21 [1] RSPM (R 4.3.0)
## yaml 2.3.8 2023-12-11 [1] RSPM (R 4.3.0)
##
## [1] /usr/local/lib/R/site-library
## [2] /usr/local/lib/R/library
## [1] /usr/local/lib/R/site-library
## [2] /usr/local/lib/R/library
##
## ──────────────────────────────────────────────────────────────────────────────
```

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