Merge pull request #250 from fhdsl/intro-update

[Intro] Remove old title; pics
fhdsl · Dec 5, 2024 · 1c5c2e7 · 1c5c2e7
2 parents 6ce432c + 525a1a0
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diff --git a/config.yml b/config.yml
@@ -1,19 +1,17 @@
 default:
-  course_dates: >
-      * **Summer Session ** : July 8-18 (online/virtual course) + July 29-31 (in person in Seattle)
-
-      * **Fall Session ** : September 30 - October 10 (online/virtual course) + October 23-25 (in person in Seattle)
-  course_time: "1:30 p.m. - 4:50 p.m. ET"
-  register_link: "https://forms.gle/BNrdKJJ8PHpQtKMS8"
+  online_dates: "June 2026"
+  online_times: "10:30am - 2pm Pacific Time"
+  codeathon_dates: "June 2026"
+  codeathon_times: "9:30am - 4pm Pacific Time"
+  register_link: "https://forms.gle/pfX4zCPFjTinKttaA"
   codeathon_schedule: "https://docs.google.com/document/d/1ZD-w0vc3Vtv1vf95h6323zaaxORg9vC7Hp4I_IUeW0I/edit?usp=sharing"
   instructor_slides: "https://drive.google.com/drive/folders/18LZlTF-iGwM6kZvFGeoFq1wFmIvOyCYQ?usp=sharing"
-  lightning_talk_folder: "https://drive.google.com/drive/folders/1YyWArRRKWJ8it6fx9emgqT6S_WsVJLJM?usp=sharing"
-  #final_due_date: "January 24th at 11:59pm ET"
-  #grades_due: "January 26"
-  holiday: "In recognition of [Martin Luther King Jr. Day](https://en.wikipedia.org/wiki/Martin_Luther_King_Jr._Day), there will be **no class on Monday January 15th, 2024**."
-  google_survey: "https://forms.gle/JAsLbyRDtCtxwgFG9"
+  lightning_talk_folder: ""
+
+  pulsecheck_survey: ""
+  research_survey: ""
+
   slack_workspace: "https://daseh.slack.com/"
-  # ta: "Padmashri Saravanan (psarava1 at jhu.edu), Alex Newman (anewma28 at jhu.edu)"
   ds: "Candace Savonen (csavonen at fredhutch.org)"
   instructors: "[Carrie Wright](https://carriewright11.github.io/) (cwright2 @ fredhutch.org), [Ava Hoffman](https://www.avahoffman.com/) (ahoffma2 at fredhutch.org), [Elizabeth Humphries]() (ehumphri at fredhutch.org)"
   r_version: "(4.4.1 (called 'Race for your Life') as of June 14, 2024)"
@@ -22,4 +20,3 @@ default:
   r_dl_windows: "https://cran.r-project.org/bin/windows/base/R-4.4.1-win.exe"
   rstudio_dl_mac: "https://download1.rstudio.org/electron/macos/RStudio-2024.04.2-764.dmg"
   rstudio_dl_windows: "https://download1.rstudio.org/electron/windows/RStudio-2024.04.2-764.exe"
-
diff --git a/docs/_schedule_table.Rmd b/docs/_schedule_table.Rmd
@@ -3,7 +3,7 @@
 | [Day 0](docs/module_details/day0.html) | Homework 1                  |                                                                                                                                                                                                                                      | [HTML](modules/HW/homework1.html)                                                                                                                                                                                                                                            |                                                                                    |
 |                                        |                             |                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                              |                                                                                    |
 | [Day 1](docs/module_details/day1.html) | Intro                       | [HTML](modules/Intro/Intro.html), [PDF](modules/Intro/Intro.pdf), [Rmd](modules/Intro/Intro.Rmd)                                                                                                                                     |                                                                                                                                                                                                                                                                              | [Day 1 Cheatsheet](modules/cheatsheets/Day-1.pdf)                                  |
-|                                        | Basic R                     | [HTML](modules/Basic_R/Basic_R.html), [PDF](modules/Basic_R/Basic_R.pdf), [Rmd](modules/Basic_R/Basic_R.Rmd)                                                                                                                         | [Lab Rmd](modules/Basic_R/lab/Basic_R_Lab.Rmd), [Key](modules/Basic_R/lab/Basic_R_Lab_Key.Rmd), [Key HTML](modules/Basic_R/lab/Basic_R_Lab_Key.html)                                                                                                                         |                                                                                    |
+|                                        | Basic R                     | [HTML](modules/Basic_R/Basic_R.html), [PDF](modules/Basic_R/Basic_R.pdf), [Rmd](modules/Basic_R/Basic_R.Rmd)                                                                                                                         | [HTML](modules/Basic_R/lab/Basic_R_Lab.html), [Key HTML](modules/Basic_R/lab/Basic_R_Lab_Key.html)                                                                                                                                                                           |                                                                                    |
 |                                        | RStudio                     | [HTML](modules/RStudio/RStudio.html), [PDF](modules/RStudio/RStudio.pdf), [Rmd](modules/RStudio/RStudio.Rmd)                                                                                                                         | [Lab Rmd](modules/RStudio/lab/RStudio_Lab.Rmd), [Key](modules/RStudio/lab/RStudio_Lab_Key.Rmd), [Key HTML](modules/RStudio/lab/RStudio_Lab_Key.html)                                                                                                                         |                                                                                    |
 |                                        |                             |                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                              |                                                                                    |
 | [Day 2](docs/module_details/day2.html) | Reproducibility             | [HTML](modules/Reproducibility/Reproducibility.html), [PDF](modules/Reproducibility/Reproducibility.pdf), [Rmd](modules/Reproducibility/Reproducibility.Rmd)                                                                         | [Lab Rmd](modules/Reproducibility/lab/Reproducibility_Lab.Rmd), [Key](modules/Reproducibility/lab/Reproducibility_Lab_Key.Rmd), [Key HTML](modules/Reproducibility/lab/Reproducibility_Lab_Key.html)                                                                         | [Good scientific coding practices](resources/good-scientific-coding-practices.pdf) |

diff --git a/index.Rmd b/index.Rmd
@@ -20,11 +20,6 @@ knitr::opts_chunk$set(warning = FALSE, message = FALSE)
 # Welcome!
 ***
 
-<!-- <div class="leafshape" id="one"><br><b>Travel <br> awards <br> are available <br>for eligible participants!<br><br> -->
-
-<!-- &emsp; Sept 30 - Oct 10 (online) &emsp; <br> Oct 23 - 25 (Seattle) <br>  -->
-<!-- <a href="https://forms.gle/BNrdKJJ8PHpQtKMS8"> Applications <br> Open! </b><br></a></span> <br> </div> -->
-
 Data Science for Environmental Health (DaSEH) is a short course that combines **online** learning and an **in-person** project-focused intensive. DaSEH is tailored for beginners and novices in R programming, offering instruction on importing, wrangling, visualizing, and analyzing data. It provides hands-on training in using R for statistical computing, a widely-used open-source tool for data analysis and visualization.
 
 This training initiative is funded by National Institute of Environmental Health Sciences [1R25ES035590-01](https://reporter.nih.gov/search/cMEAgQFeo025gUX1DDzH9g/project-details/10746327). 
@@ -42,17 +37,17 @@ knitr::include_graphics("images/class.jpg")
 
 #### Online course
 
-_September 30 - October 10_  
-_10:30am - 2pm Pacific Time_  
+_`r config::get("online_dates")`_
+_`r config::get("online_times")`_
 
 Two-week online course in R programming foundations.
 
 <br>
 
 #### Code-a-thon
 
-_October 23-25 (in person in Seattle)_  
-_9:30am - 4pm Pacific Time_  
+_`r config::get("codeathon_dates")`_
+_`r config::get("codeathon_times")`_
 
 Three-day in-person intensive “Code-a-thon”. Here, we'll work on authentic environmental health projects. We'll also practice data ethics skills in peer code review, reproducibility, and transparency in a supportive environment. 
 

diff --git a/modules/Basic_R/lab/Basic_R_Lab.Rmd b/modules/Basic_R/lab/Basic_R_Lab.Rmd
@@ -9,7 +9,7 @@ editor_options:
 knitr::opts_chunk$set(echo = TRUE)
 ```
 
-Instructions: Paste your code from the console in the gray boxes below.
+Instructions: Complete the following in the R console.
 
 # Part 1
 

diff --git a/modules/Data_Input/Data_Input.Rmd b/modules/Data_Input/Data_Input.Rmd
@@ -22,13 +22,7 @@ pre { /* Code block - slightly smaller in this lecture */
 
 This course will involve moving files around on your computer and downloading files.
 
-If you are new to this - check out these videos.
-
-If you have a PC: https://youtu.be/we6vwB7DsNU
-
-If you have a Mac: https://www.youtube.com/watch?v=Ao9e0cDzMrE
-
-You can find these on the resource page of the website.
+If you are new to this - check out the videos on the resource page of the website.
 
 # R Projects
 

diff --git a/modules/Intro/Intro.Rmd b/modules/Intro/Intro.Rmd
@@ -31,7 +31,7 @@ Poll: How are you feeling right now?
 
 **Carrie Wright (she/her)**
 
-Senior Staff Scientist and Training Lead, Fred Hutchinson Cancer Center
+Senior Staff Scientist, Fred Hutchinson Cancer Center
 
 Associate, Department of Biostatistics, JHSPH
 
@@ -278,12 +278,10 @@ More on that soon!
 
 ## Summary
 
-🏠 [Class Website - `https://daseh.org/`](https://daseh.org/) - Logistics, resources, and help!
-
-📝 [Research Survey - `https://forms.gle/vxp8vxdN2Ck2j7uY6`](https://forms.gle/vxp8vxdN2Ck2j7uY6)
+🏠 [Class Website - https://daseh.org/](https://daseh.org/) - Logistics, resources, and help!
 
-🩺 [Pulse Check - `r config::get("google_survey")`](`r config::get("google_survey")`)
+📝 [Research Survey - `r config::get("research_survey")`](`r config::get("research_survey")`)
 
-## Summary
+🩺 [Pulse Check - `r config::get("pulsecheck_survey")`](`r config::get("pulsecheck_survey")`)
 
 Image by <a href="https://pixabay.com/users/geralt-9301/?utm_source=link-attribution&amp;utm_medium=referral&amp;utm_campaign=image&amp;utm_content=812226">Gerd Altmann</a> from <a href="https://pixabay.com//?utm_source=link-attribution&amp;utm_medium=referral&amp;utm_campaign=image&amp;utm_content=812226">Pixabay</a>
diff --git a/modules/RStudio/RStudio.Rmd b/modules/RStudio/RStudio.Rmd
@@ -345,6 +345,25 @@ Which button do you click to run the code in a current chunk?
 knitr::include_graphics("images/chunk_gut_check.png")
 ```
 
+## Lab: Getting started
+
+To do this lab we need to:
+
+- Download the file at the link above by clicking on it or go to the website schedule page
+
+- Find the downloaded file on your computer
+
+- Open the file in RStudio (double clicking the file name typically works, otherwise right click)
+
+- Might need to restart RStudio
+
+These videos can help if you aren't sure where your downloads are:
+
+If you have a PC: https://youtu.be/we6vwB7DsNU
+
+If you have a Mac: https://www.youtube.com/watch?v=Ao9e0cDzMrE
+
+You can find these on the resource page of the class website.
 
 ## Summary