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creating initial bookdown
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ehumph committed Oct 16, 2024
1 parent 78f44dc commit 4947a8f
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12 changes: 12 additions & 0 deletions 01-BioDIGS_project_overview.Rmd
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# (PART\*) BioDIGS Overview {-}

# Background

```{r, echo = FALSE, results='asis'}
cow::borrow_chapter(
doc_path = "child/_child_biodigs_overview.Rmd",
branch = "main",
repo_name = "fhdsl/GDSCN_BioDIGS_Book"
)
```
20 changes: 0 additions & 20 deletions 01-intro.Rmd

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186 changes: 0 additions & 186 deletions 02-chapter_of_course.Rmd

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9 changes: 9 additions & 0 deletions 02-research_team.Rmd
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# Research Team

```{r, echo = FALSE, results='asis'}
cow::borrow_chapter(
doc_path = "child/_child_research_team.Rmd",
branch = "main",
repo_name = "fhdsl/GDSCN_BioDIGS_Book"
)
```
52 changes: 0 additions & 52 deletions 03-AnVIL_modules.Rmd

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9 changes: 9 additions & 0 deletions 03-data_tour.Rmd
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# BioDIGS Data

```{r, echo = FALSE, results='asis'}
cow::borrow_chapter(
doc_path = "child/_child_data_tour.Rmd",
branch = "main",
repo_name = "fhdsl/GDSCN_BioDIGS_Book"
)
```
5 changes: 4 additions & 1 deletion 05-billing_modules.Rmd → 04-billing_modules.Rmd
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@@ -1,10 +1,13 @@

```{r echo = FALSE}
knitr::opts_chunk$set(out.width = "100%")
```

# (PART\*) AnVIL Overview {-}

# Billing

Modules about billing and Billing Projects on Google Cloud Platform and Terra.
In order to use AnVIL, you will need to set up a billing account and add members to it. These sections guide you through that process.

<br>

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44 changes: 0 additions & 44 deletions 04-workspace_modules.Rmd

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27 changes: 27 additions & 0 deletions 05-anvil_onboarding.Rmd
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# AnVIL Workspace

```{r, include = FALSE}
ottrpal::set_knitr_image_path()
```

You can easily access the data on AnVIL by cloning the dedicated workspace. These sections guide you through creating an AnVIL account and accessing the workspace.


## Create Google Account

```{r, echo = FALSE, results='asis'}
cow::borrow_chapter(
doc_path = "child/_child_google_create_account.Rmd",
repo_name = "jhudsl/AnVIL_Template"
)
```

## Clone the Workspace

```{r, echo = FALSE, results='asis'}
cow::borrow_chapter(
doc_path = "child/_child_workspace_clone.Rmd",
repo_name = "jhudsl/AnVIL_Template"
)
```
15 changes: 0 additions & 15 deletions 06-onboarding_modules.Rmd

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