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Dexcription how to install the update
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# Version 0.3.8 | ||
################################################################################ | ||
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The file structure for the non-host reads has changed in this version, so that, upon rerun, the pipeline | ||
will most likely regenerate the entire workflow, when you ran it prior to this release on your data. To | ||
avoid that behavior, you would first need to run the preprocess__bowtie2 rules like this | ||
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bash run_Pipeline-Holoruminant-meta.sh preprocess__bowtie2 | ||
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to generate a the new files from the structe (and also get the quantification for the chromosomes) followed by | ||
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bash run_Pipeline-Holoruminant-meta.sh --touch | ||
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to adjust the files to the new structe. After that, the pipeline should be again aware of the files. | ||
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And as always, newer start the pipline without a dry-run after an update on an existing project!!! |