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@fmi-basel

Friedrich Miescher Institute for Biomedical Research

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  1. latent-predictive-learning latent-predictive-learning Public

    Code to accompany our paper "The combination of Hebbian and predictive plasticity learns invariant object representations in deep sensory networks"

    Jupyter Notebook 23 6

  2. LSTree LSTree Public

    LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.

    Python 18

  3. stork stork Public

    A differentiable spiking neural network simulator

    Python 18 4

  4. neural-tangent-transfer neural-tangent-transfer Public

    Code accompanying our paper "Finding trainable sparse networks through Neural Tangent Transfer" to be published at ICML-2020.

    Jupyter Notebook 13 8

  5. glib-nature2018-materials glib-nature2018-materials Public

    Image Processing Package for the Paper "Self-organization and symmetry breaking in intestinal organoid development"

    11 3

  6. RDCNet RDCNet Public

    Recurrent Dilated Convolutional Network

    Python 9 1

Repositories

Showing 10 of 78 repositories
  • faim-cryoflare Public

    CryoFLARE: FMI Live Analysis and Reconstruction Engine for single particle Cryo EM data

    fmi-basel/faim-cryoflare’s past year of commit activity
    C++ 4 GPL-3.0 0 1 0 Updated Jan 24, 2025
  • stork Public

    A differentiable spiking neural network simulator

    fmi-basel/stork’s past year of commit activity
    Python 18 MIT 4 0 0 Updated Jan 24, 2025
  • gliberal-scMultipleX Public

    Feature extraction and linking of multiplexing data.

    fmi-basel/gliberal-scMultipleX’s past year of commit activity
    Python 9 BSD-3-Clause 1 20 0 Updated Jan 21, 2025
  • gpeters-fetchNOMe Public

    R package for fetching NOMe-seq data from BAM files

    fmi-basel/gpeters-fetchNOMe’s past year of commit activity
    C++ 0 0 0 0 Updated Jan 15, 2025
  • latent-predictive-learning Public

    Code to accompany our paper "The combination of Hebbian and predictive plasticity learns invariant object representations in deep sensory networks"

    fmi-basel/latent-predictive-learning’s past year of commit activity
    Jupyter Notebook 23 MIT 6 0 0 Updated Jan 14, 2025
  • neural-decoding-RSNN Public

    Recurrent spiking neural networks (RSNNs) for decoding of motor signals from cortical spike trains

    fmi-basel/neural-decoding-RSNN’s past year of commit activity
    Python 7 MIT 2 0 0 Updated Jan 8, 2025
  • faim-robocopy Public

    A python-based UI for robocopy

    fmi-basel/faim-robocopy’s past year of commit activity
    Python 3 MIT 0 6 0 Updated Jan 7, 2025
  • faim-jetraw Public
    fmi-basel/faim-jetraw’s past year of commit activity
    Python 0 Apache-2.0 0 3 1 Updated Dec 23, 2024
  • gbuehler-MiniChip Public

    small collection of R functions for ChIPseq analysis

    fmi-basel/gbuehler-MiniChip’s past year of commit activity
    HTML 2 1 0 0 Updated Dec 20, 2024
  • labbook-explog-fmi Public

    Obsidian plugin

    fmi-basel/labbook-explog-fmi’s past year of commit activity
    TypeScript 0 0 0 0 Updated Dec 19, 2024