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Update runnableitem.xml
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foobarx authored Jul 31, 2017
1 parent 2bf4ab6 commit a5379d1
Showing 1 changed file with 8 additions and 5 deletions.
13 changes: 8 additions & 5 deletions runnableitem.xml
Original file line number Diff line number Diff line change
Expand Up @@ -100,7 +100,7 @@
</ns4:references>

<ns4:executable>
<ns4:version>1.0.17</ns4:version>
<ns4:version>1.0.18</ns4:version>
<ns4:execInfo>
<ns4:executableType>docker</ns4:executableType>
<ns4:image>traitar-docker</ns4:image>
Expand Down Expand Up @@ -134,6 +134,7 @@
<ns4:option>archive_type tar.gz mode from_genes out_archive </ns4:option>
<ns4:example></ns4:example>
</ns4:output>
<!--
<ns4:output id="dialign_output_aaalignment2">
<ns4:name xml:lang="en">AA alignment2</ns4:name>
<ns4:shortDescription xml:lang="en">multiples amino acid alignment</ns4:shortDescription>
Expand All @@ -143,21 +144,22 @@
<ns4:option>archive_type tar.gz mode from_genes out_archive </ns4:option>
<ns4:example></ns4:example>
</ns4:output>

-->
<ns4:outputfile id="dialign_outputfile_aaalignment">
<ns4:name xml:lang="en">gene_prediction</ns4:name>
<ns4:folder>`pwd`/out/gene_prediction/</ns4:folder>
<ns4:filename>blah.zip</ns4:filename>
<ns4:contenttype>archive/zip</ns4:contenttype>

</ns4:outputfile>
<!--
<ns4:outputfile id="dialign_outputfile_aaalignment2">
<ns4:name xml:lang="en">gene_prediction2</ns4:name>
<ns4:folder>`pwd`/out/gene_prediction/</ns4:folder>
<ns4:filename>heatmap.png</ns4:filename>
<ns4:contenttype>image/pdf</ns4:contenttype>

</ns4:outputfile>
-->
<ns4:param id="dialign_param_threshold">
<ns4:name xml:lang="en">threshold</ns4:name>
<ns4:shortDescription xml:lang="en">Threshold for fragments weights</ns4:shortDescription>
Expand Down Expand Up @@ -208,12 +210,13 @@ between DIALIGN 2 and the first version of the program.</ns2:p>
<ns4:name xml:lang="en">AA alignment</ns4:name>
<ns4:shortDescription xml:lang="en">multiples amino acid alignment</ns4:shortDescription>
<ns4:inputref ref="dialign_input_aaalignment"/>
<ns4:inputref ref="dialign_input_aaalignment2"/>
<ns4:outputref ref="dialign_output_aaalignment"/>
<ns4:outputfileref ref="dialign_outputfile_aaalignment"/>
<!--
<ns4:inputref ref="dialign_input_aaalignment2"/>
<ns4:outputref ref="dialign_output_aaalignment2"/>
<ns4:outputfileref ref="dialign_outputfile_aaalignment2"/>
<ns4:outputfileref ref="dialign_outputfile_aaalignment2"/>
-->
<ns4:paramGroup id="dialign_paramgroup_for_dialign_function_aa">
<ns4:description xml:lang="en"/>
<ns4:paramref ref="dialign_param_threshold"/>
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