An advanced Fiji plugin for image segmentation.
>> Can be found on: https://imagej.net/plugins/labkit.
Please cite our paper: LABKIT: Labeling and Segmentation Toolkit for Big Image Data
@article{arzt2022labkit
author={Arzt, Matthias and Deschamps, Joran and Schmied, Christopher and Pietzsch, Tobias and Schmidt, Deborah and Tomancak, Pavel and Haase, Robert and Jug, Florian},
title={LABKIT: Labeling and Segmentation Toolkit for Big Image Data},
journal={Frontiers in Computer Science},
volume={4},
year={2022},
url={https://www.frontiersin.org/article/10.3389/fcomp.2022.777728},
doi={10.3389/fcomp.2022.777728},
issn={2624-9898},
}
- This github repository contains the Labkit user interface / Fiji plugin.
- https://github.com/juglab/labkit-pixel-classification contains the implementation of the pixel classification algorithm.
- https://github.com/juglab/labkit-command-line contains a command line interface, that can be used to execute the Labkit pixel classification algorithm on the command line and HPC clusters.
If you developed a segmentation algorithm, but you don't want to develope your own UI. You might just use the Labkit UI, see this example:
(and don't hesitate to contact us ;)