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| Original file line number | Diff line number | Diff line change |
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| #!/bin/python3 | ||
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| import requests | ||
| import urllib.parse | ||
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| endpoint = "https://taxref.mnhn.fr/sparql?query=" | ||
| headers = { 'accept' : 'text/turtle' } | ||
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| def run_query(query, outputfile): | ||
| output = requests.get(endpoint + urllib.parse.quote(query), headers = headers) | ||
| with open(outputfile, "w") as f: | ||
| f.write(output.text) | ||
| return | ||
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| prefixes = ''' | ||
| prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> | ||
| prefix owl: <http://www.w3.org/2002/07/owl#> | ||
| prefix dwc: <http://rs.tdwg.org/dwc/terms/> | ||
| prefix taxref: <http://taxref.mnhn.fr/lod/> | ||
| prefix taxrefprop: <http://taxref.mnhn.fr/lod/property/> | ||
| prefix taxrefrk: <http://taxref.mnhn.fr/lod/taxrank/> | ||
| ''' | ||
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| # Add dwc:subgenus | ||
| query = prefixes + ''' | ||
| construct { ?s dwc:subgenus ?tLabel. } | ||
| where { | ||
| graph <http://taxref.mnhn.fr/lod/graph/classes/15.0> { | ||
| ?t a owl:Class; | ||
| taxrefprop:hasRank taxrefrk:SubGenus; | ||
| rdfs:label ?tLabel. | ||
| ?s rdfs:subClassOf+ ?t. | ||
| } | ||
| } | ||
| ''' | ||
| run_query(query, "dwc_subgenus.ttl") | ||
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| # Add dwc:genus | ||
| query = prefixes + ''' | ||
| construct { ?s dwc:genus ?tLabel. } | ||
| where { | ||
| graph <http://taxref.mnhn.fr/lod/graph/classes/15.0> { | ||
| ?t a owl:Class; | ||
| taxrefprop:hasRank taxrefrk:Genus; | ||
| rdfs:label ?tLabel. | ||
| ?s rdfs:subClassOf+ ?t. | ||
| } | ||
| }''' | ||
| run_query(query, "dwc_genus.ttl") | ||
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| # Add dwc:subfamily | ||
| query = prefixes + ''' | ||
| construct { ?s dwc:subfamily ?tLabel. } | ||
| where { | ||
| graph <http://taxref.mnhn.fr/lod/graph/classes/15.0> { | ||
| ?t a owl:Class; | ||
| taxrefprop:hasRank taxrefrk:SubFamily; | ||
| rdfs:label ?tLabel. | ||
| ?s rdfs:subClassOf+ ?t. | ||
| } | ||
| }''' | ||
| run_query(query, "dwc_subfamily.ttl") | ||
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| # Add dwc:family | ||
| query = prefixes + ''' | ||
| construct { ?s dwc:family ?tLabel. } | ||
| where { | ||
| graph <http://taxref.mnhn.fr/lod/graph/classes/15.0> { | ||
| ?t a owl:Class; | ||
| taxrefprop:hasRank taxrefrk:Family; | ||
| rdfs:label ?tLabel. | ||
| ?s rdfs:subClassOf+ ?t. | ||
| } | ||
| }''' | ||
| run_query(query, "dwc_family.ttl") | ||
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| # Add dwc:order | ||
| query = prefixes + ''' | ||
| construct { ?s dwc:order ?tLabel. } | ||
| where { | ||
| graph <http://taxref.mnhn.fr/lod/graph/classes/15.0> { | ||
| ?t a owl:Class; | ||
| taxrefprop:hasRank taxrefrk:Order; | ||
| rdfs:label ?tLabel. | ||
| ?s rdfs:subClassOf+ ?t. | ||
| } | ||
| }''' | ||
| run_query(query, "dwc_order.ttl") | ||
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| # Add dwc:phylum | ||
| query = prefixes + ''' | ||
| construct { ?s dwc:phylum ?tLabel. } | ||
| where { | ||
| graph <http://taxref.mnhn.fr/lod/graph/classes/15.0> { | ||
| ?t a owl:Class; | ||
| taxrefprop:hasRank taxrefrk:Phylum; | ||
| rdfs:label ?tLabel. | ||
| ?s rdfs:subClassOf+ ?t. | ||
| } | ||
| }''' | ||
| run_query(query, "dwc_phylum.ttl") | ||
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| # Add dwc:kingdom | ||
| query = prefixes + ''' | ||
| construct { ?s dwc:kingdom ?tLabel. } | ||
| where { | ||
| graph <http://taxref.mnhn.fr/lod/graph/classes/15.0> { | ||
| ?t a owl:Class; | ||
| taxrefprop:hasRank taxrefrk:Kingdom; | ||
| rdfs:label ?tLabel. | ||
| ?s rdfs:subClassOf+ ?t. | ||
| } | ||
| }''' | ||
| run_query(query, "dwc_kingdom.ttl") | ||
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