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Adding the option to specify the sort order of an output SAM file produced by SamBuilder. #25

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merged 1 commit into from
Nov 14, 2023

Add sort_order to SamBuilder specifing output SAM order

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Adding the option to specify the sort order of an output SAM file produced by SamBuilder. #25

Add sort_order to SamBuilder specifing output SAM order
ae5b948
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Codecov / codecov/project succeeded Nov 14, 2023 in 0s

93.01% (+0.09%) compared to 273c81c

View this Pull Request on Codecov

93.01% (+0.09%) compared to 273c81c

Details

Codecov Report

Attention: 2 lines in your changes are missing coverage. Please review.

Comparison is base (273c81c) 92.91% compared to head (ae5b948) 93.01%.

Files Patch % Lines
fgpyo/sam/builder.py 87.50% 1 Missing and 1 partial ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main      #25      +/-   ##
==========================================
+ Coverage   92.91%   93.01%   +0.09%     
==========================================
  Files          30       30              
  Lines        3079     3119      +40     
  Branches      572      579       +7     
==========================================
+ Hits         2861     2901      +40     
  Misses        145      145              
  Partials       73       73              

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