Skip to content

Cuterle v2.1.0

Latest
Latest
Compare
Choose a tag to compare
@furacca furacca released this 05 Jun 08:56
· 4 commits to main since this release
v2.1.0
737ee96
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.

Update v2.1.0

This is the v2.1.0 stable release of Cuterle, a bioinformatic tool which return an output file (extracted_domain.fasta) containing every domain annotated by InterProScan (~.tsv file) via Pfam or SMART analysis from the list of protein (~.fasta file) submitted.

New features

  • Graphical output: now
  • Everytime Cuterle runs new analysis a new "YYYY/MM/DD_Analysis_number_X" folder is created

Minor update

General

  • Log file is used to trace the file name's counter
  • Minor updates

Manual and Assisted mode

  • MInor updates

Bug fixes

Nothing to report (yet).

Install the requirements in your env

# Install requirements
pip install -r requirements.txt

Usage

Manual mode (the powerful one):

# Run main.py -h to see every possible options
python3 main.py [everything you decide to do]

Assisted mode:

# Run main.py and follow the instructions printed on screen
python3 main.py

Graphical mode:

# Run main_gui.py to have a graphical view of Cuterle
python3 main_gui.py
Assets 2
Loading