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Handle-umis - These tools are compatible with the pipeline SAIP using UMIs and smcounter2



This module has 4 packages :

- add_umi
	*Add UMIs to the read_id.*
	This is useful for the pipeline SAIP using UMIs after the read-trimming.

- add_tags
	*Add primer and UMI tags to all reads.*
	This is useful for the pipeline SAIP using UMIs after the clustering with umi_tools group.

- txt_to_fasta
	*Convert the primer file into fasta.*
	This is used with cutadapt for the gene specific primer clipping.

- txt_to_vcf
	*Convert the variants file into vcf.*
	This is used after smCounter2 before the annotations with SNPEff et SNPSift.

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