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Schema urgent fixes to main: type => set type and definitions -> $defs #183

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merged 61 commits into from
Dec 12, 2024
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efec4c3
Merge pull request #131 from ga4gh-beacon/main
costero-e Jul 10, 2024
0844996
Fixed #138
datsirul Jul 16, 2024
60da8ac
Additional location fix
datsirul Jul 16, 2024
8a97a68
Fixed #136
datsirul Jul 16, 2024
c58a9c4
Fixed #137
datsirul Jul 16, 2024
dd18509
Fixed #140
datsirul Jul 16, 2024
a6fe8ad
Cleanup of descriptions in endpoints files
mbaudis Jul 17, 2024
44ec384
update of inline descriptions in the analysis schema document
mbaudis Jul 19, 2024
0dfd409
Fixed #135
datsirul Jul 22, 2024
1cc8914
definitions -> $defs
mbaudis Jul 25, 2024
ba16137
Merge pull request #155 from ga4gh-beacon/definitions-to-$defs
jrambla Sep 12, 2024
27d8a4d
fix invalid aCollectionOf property definition
redmitry Sep 13, 2024
a729ef4
update yaml
redmitry Sep 13, 2024
7489882
remove conflicting specifications in filteringTerms
mbaudis Sep 23, 2024
7275c3f
Merge branch 'schema-urgent-fixes' into remove-conflicting-filteringT…
mbaudis Sep 27, 2024
28cc8dc
Merge branch 'schema-urgent-fixes' into fix-138
jrambla Oct 8, 2024
bf88b39
Merge branch 'schema-urgent-fixes' into fix-137
jrambla Oct 8, 2024
7443dd2
Merge branch 'schema-urgent-fixes' into endpoints-description-fixes
costero-e Oct 8, 2024
1e8c9a0
Merge pull request #148 from ga4gh-beacon/endpoints-description-fixes
costero-e Oct 8, 2024
3dc7b3d
Merge branch 'schema-urgent-fixes' into fix-138
costero-e Oct 8, 2024
f05d7e7
changelog updated with 2.1.1
costero-e Oct 8, 2024
6880bb2
Merge pull request #170 from ga4gh-beacon/changelog
mbaudis Nov 8, 2024
c735d6f
Merge branch 'schema-urgent-fixes' into remove-conflicting-filteringT…
mbaudis Nov 8, 2024
6342540
Merge pull request #165 from ga4gh-beacon/remove-conflicting-filterin…
mbaudis Nov 8, 2024
6044850
type => set type in example
mbaudis Nov 9, 2024
4803e1d
Merge pull request #178 from ga4gh-beacon/fix-resultSet-examples
mbaudis Nov 9, 2024
31b5063
Merge pull request #179 from ga4gh-beacon/schema-urgent-fixes
mbaudis Nov 11, 2024
98b899c
re-writing of some inline schema descriptions
mbaudis Nov 11, 2024
cd1d460
JSON versions of last commit
mbaudis Nov 11, 2024
dce8dff
adding links in changelog to point to each of the beacon v2 versions
costero-e Nov 12, 2024
e16fc9f
Merge branch 'schema-urgent-fixes' into changelog
costero-e Nov 12, 2024
5c7f5a9
refactoring "info" and its links
mbaudis Nov 15, 2024
beeb5f9
VRS references fix
mbaudis Nov 15, 2024
c634b81
VRS references from 1.2 => 1.3
mbaudis Nov 16, 2024
b1f81dc
removing the schema deparser changes
mbaudis Nov 16, 2024
4c2b35b
fix typo in example
mbaudis Nov 24, 2024
f18373e
Merge pull request #185 from ga4gh-beacon/fix-vrs-schema-link
mbaudis Nov 24, 2024
cd92b82
Merge pull request #189 from ga4gh-beacon/main
mbaudis Nov 25, 2024
73c71bc
Merge pull request #186 from ga4gh-beacon/vrs-1.3-version-update
costero-e Dec 12, 2024
0602454
Merge pull request #190 from ga4gh-beacon/fix-vrs-schema-link
costero-e Dec 12, 2024
f6d672c
Merge branch 'schema-urgent-fixes' into refactor-deep-framework-links
costero-e Dec 12, 2024
f272224
Merge pull request #184 from ga4gh-beacon/refactor-deep-framework-links
costero-e Dec 12, 2024
07a6f02
Update CopyNumber.md
costero-e Dec 12, 2024
7bf20b8
Update beacon_yaml2md.pl
costero-e Dec 12, 2024
507da0a
Update CopyNumber.yaml
costero-e Dec 12, 2024
53a6fca
Merge branch 'schema-urgent-fixes' into changelog
costero-e Dec 12, 2024
80036dd
Merge pull request #181 from ga4gh-beacon/changelog
costero-e Dec 12, 2024
f70a262
Merge branch 'schema-urgent-fixes' into inline-documentation-updates
costero-e Dec 12, 2024
d02c6bf
Merge pull request #180 from ga4gh-beacon/inline-documentation-updates
costero-e Dec 12, 2024
8d9715b
Merge branch 'schema-urgent-fixes' into aCollectionOf-property-fix
costero-e Dec 12, 2024
4636f61
Merge pull request #163 from ga4gh-beacon/aCollectionOf-property-fix
costero-e Dec 12, 2024
f8f455e
Merge branch 'schema-urgent-fixes' into fix-135
costero-e Dec 12, 2024
5c693b0
Merge pull request #152 from datsirul/fix-135
costero-e Dec 12, 2024
57f3ca1
Merge branch 'schema-urgent-fixes' into fix-140
costero-e Dec 12, 2024
39f4242
Merge pull request #145 from datsirul/fix-140
costero-e Dec 12, 2024
d648770
Merge branch 'schema-urgent-fixes' into fix-137
costero-e Dec 12, 2024
691647d
Merge pull request #144 from datsirul/fix-137
costero-e Dec 12, 2024
0a777e4
Merge branch 'schema-urgent-fixes' into fix-136
costero-e Dec 12, 2024
e79b76d
Merge pull request #143 from datsirul/fix-136
costero-e Dec 12, 2024
8e9b9e3
Merge branch 'schema-urgent-fixes' into fix-138
costero-e Dec 12, 2024
8e0c390
Merge pull request #142 from datsirul/fix-138
costero-e Dec 12, 2024
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Original file line number Diff line number Diff line change
@@ -30,7 +30,7 @@
"url": "https://api.mygenomeservice.org/Handover/9dcc48d7-fc88-11e8-9110-b0c592dbf8c0"
}
],
"type": "dataset"
"setType": "dataset"
}
]
}
Original file line number Diff line number Diff line change
@@ -4,7 +4,7 @@ resultSets:
type: dataset
exists: false
- id: datasetB
type: dataset
setType: dataset
exists: true
resultsCount: 2
resultsHandovers:
Original file line number Diff line number Diff line change
@@ -1,11 +1,4 @@
{
"$schema": "https://json-schema.org/draft/2020-12/schema",
"filteringTerms": [
{
"ftType": "ontologyTerm",
"id": "DUO:0000006",
"label": "health or medical or biomedical research",
"version": "2021-02-23"
}
]
"filteringTerms": []
}
Original file line number Diff line number Diff line change
@@ -1,11 +1,4 @@
{
"$schema": "https://json-schema.org/draft/2020-12/schema",
"filteringTerms": [
{
"ftType": "ontologyTerm",
"id": "DUO:0000006",
"label": "health or medical or biomedical research",
"version": "2021-02-23"
}
]
"filteringTerms": []
}
Original file line number Diff line number Diff line change
@@ -1,13 +1,4 @@
{
"$schema": "https://json-schema.org/draft/2020-12/schema",
"filteringTerms": [
{
"ftType": "alphanumeric",
"id": "gene"
},
{
"ftType": "alphanumeric",
"id": "aminoacidChanges"
}
]
"filteringTerms": []
}
Original file line number Diff line number Diff line change
@@ -1,6 +1,2 @@
$schema: https://json-schema.org/draft/2020-12/schema
filteringTerms:
- ftType: ontologyTerm
id: DUO:0000006
label: health or medical or biomedical research
version: '2021-02-23'
filteringTerms: []
Original file line number Diff line number Diff line change
@@ -1,6 +1,2 @@
$schema: https://json-schema.org/draft/2020-12/schema
filteringTerms:
- ftType: ontologyTerm
id: DUO:0000006
label: health or medical or biomedical research
version: '2021-02-23'
filteringTerms: []
Original file line number Diff line number Diff line change
@@ -1,6 +1,2 @@
$schema: https://json-schema.org/draft/2020-12/schema
filteringTerms:
- ftType: alphanumeric
id: gene
- ftType: alphanumeric
id: aminoacidChanges
filteringTerms: []
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