this allows for proper concatenation of a collection of these outputs #174
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Previously, when one would run this tool on a collection of protein files and then try to concatenate these rmsd outputs (to further analyze with histograms, for example), the outputs would incorrectly be concatenated horizontally as a continue string, which made it difficult to analyze the data. This new change adds a new line after the rmsd output, which then allows for proper concatenation of the files, leading to a column of all the rmsd values.