Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Cron job maintenance #448

Merged
merged 30 commits into from
Apr 18, 2024
Merged

Cron job maintenance #448

merged 30 commits into from
Apr 18, 2024

Commits on Feb 9, 2024

  1. Remove spaces that makes helm lint unhappy

    @ksuderman
    ksuderman committed Feb 9, 2024
    Configuration menu
    Copy the full SHA
    4138130 View commit details
    Browse the repository at this point in the history

  2. First pass at defining cron jobs in the values.yaml file.

    @ksuderman
    ksuderman committed Feb 9, 2024
    Configuration menu
    Copy the full SHA
    e0b960d View commit details
    Browse the repository at this point in the history

Commits on Feb 13, 2024

  1. Fix command formatting and quoting

    @ksuderman
    ksuderman committed Feb 13, 2024
    Configuration menu
    Copy the full SHA
    9c84d17 View commit details
    Browse the repository at this point in the history

  2. Remove nodeSelector

    @ksuderman
    ksuderman committed Feb 13, 2024
    Configuration menu
    Copy the full SHA
    d2941d7 View commit details
    Browse the repository at this point in the history

Commits on Feb 16, 2024

  1. Tmp cleanup and maintenance scripts are treated as special cases.

    @ksuderman
    ksuderman committed Feb 16, 2024
    Configuration menu
    Copy the full SHA
    95474e2 View commit details
    Browse the repository at this point in the history

  2. Update the name of the container used to run the maintenance script.

    @ksuderman
    ksuderman committed Feb 16, 2024
    Configuration menu
    Copy the full SHA
    93930d7 View commit details
    Browse the repository at this point in the history

Commits on Feb 19, 2024

  1. Define all cron jobs in the values.yaml file again, but allows time d… 

    …urations to be parameterized.
    @ksuderman
    ksuderman committed Feb 19, 2024
    Configuration menu
    Copy the full SHA
    287cf13 View commit details
    Browse the repository at this point in the history

Commits on Feb 20, 2024

  1. Use walltime limit for cleanup and other minor tweaks

    @nuwang
    nuwang committed Feb 20, 2024
    Configuration menu
    Copy the full SHA
    8225be5 View commit details
    Browse the repository at this point in the history

  2. Change find units from seconds to days

    @nuwang
    nuwang committed Feb 20, 2024
    Configuration menu
    Copy the full SHA
    8cc5d94 View commit details
    Browse the repository at this point in the history

Commits on Feb 21, 2024

  1. Parameterize the nodeSelector

    @ksuderman
    ksuderman committed Feb 21, 2024
    Configuration menu
    Copy the full SHA
    64320c8 View commit details
    Browse the repository at this point in the history

  2. Remove the chown cron job

    @ksuderman
    ksuderman committed Feb 21, 2024
    Configuration menu
    Copy the full SHA
    2bbaa3a View commit details
    Browse the repository at this point in the history

  3. Reverting my revert

    @ksuderman
    ksuderman committed Feb 21, 2024
    Configuration menu
    Copy the full SHA
    df1fb39 View commit details
    Browse the repository at this point in the history

Commits on Feb 28, 2024

  1. Add extraFileMappings for cron jobs

    @ksuderman
    ksuderman committed Feb 28, 2024
    Configuration menu
    Copy the full SHA
    247cbf5 View commit details
    Browse the repository at this point in the history

  2. Start documenting cron jobs

    @ksuderman
    ksuderman committed Feb 28, 2024
    Configuration menu
    Copy the full SHA
    cf77963 View commit details
    Browse the repository at this point in the history

Commits on Mar 8, 2024

  1. Make the galaxy.yml file available in a configmap for the maintenance… 

    … cronjob
    @ksuderman
    ksuderman committed Mar 8, 2024
    Configuration menu
    Copy the full SHA
    13e4f0b View commit details
    Browse the repository at this point in the history

  2. Update galaxy/values.yaml 

    Co-authored-by: Nuwan Goonasekera <2070605+nuwang@users.noreply.github.com>
    @ksuderman @nuwang
    ksuderman and nuwang authored Mar 8, 2024
    Configuration menu
    Copy the full SHA
    27fd304 View commit details
    Browse the repository at this point in the history

Commits on Mar 12, 2024

  1. Add helper to calculate the postgres connection string

    @ksuderman
    ksuderman committed Mar 12, 2024
    Configuration menu
    Copy the full SHA
    42488ff View commit details
    Browse the repository at this point in the history

  2. Add cron job documentation and remove Galaxy versions section

    @ksuderman
    ksuderman committed Mar 12, 2024
    Configuration menu
    Copy the full SHA
    0fafea8 View commit details
    Browse the repository at this point in the history

  3. Add env definitions

    @ksuderman
    ksuderman committed Mar 12, 2024
    Configuration menu
    Copy the full SHA
    497b572 View commit details
    Browse the repository at this point in the history

  4. Maintenace job should include default env vars

    @ksuderman
    ksuderman committed Mar 12, 2024
    Configuration menu
    Copy the full SHA
    da6a97a View commit details
    Browse the repository at this point in the history

  5. Update galaxy/values.yaml 

    Co-authored-by: Nuwan Goonasekera <2070605+nuwang@users.noreply.github.com>
    @ksuderman @nuwang
    ksuderman and nuwang authored Mar 12, 2024
    Configuration menu
    Copy the full SHA
    cdc2a98 View commit details
    Browse the repository at this point in the history

  6. Update galaxy/values.yaml 

    Co-authored-by: Nuwan Goonasekera <2070605+nuwang@users.noreply.github.com>
    @ksuderman @nuwang
    ksuderman and nuwang authored Mar 12, 2024
    Configuration menu
    Copy the full SHA
    63bc997 View commit details
    Browse the repository at this point in the history

  7. Parameterize Docker image for cron jobs

    @ksuderman
    ksuderman committed Mar 12, 2024
    Configuration menu
    Copy the full SHA
    d96979a View commit details
    Browse the repository at this point in the history

Commits on Mar 13, 2024

  1. Allow mode (permissions) to be defined on extraFileMappings

    @ksuderman
    ksuderman committed Mar 13, 2024
    Configuration menu
    Copy the full SHA
    3af24cd View commit details
    Browse the repository at this point in the history

  2. Add example cron job

    @ksuderman
    ksuderman committed Mar 13, 2024
    Configuration menu
    Copy the full SHA
    3fe5723 View commit details
    Browse the repository at this point in the history

  3. Additional documentation for cron jobs

    @ksuderman
    ksuderman committed Mar 13, 2024
    Configuration menu
    Copy the full SHA
    07fdbd4 View commit details
    Browse the repository at this point in the history

Commits on Mar 14, 2024

  1. Comment out the example cron job. Examples should not add arbitrary c… 

    …ode to clusters.
    @ksuderman
    ksuderman committed Mar 14, 2024
    Configuration menu
    Copy the full SHA
    b4cbdf6 View commit details
    Browse the repository at this point in the history

Commits on Mar 17, 2024

  1. Run extraEnv values through the template engine

    @ksuderman
    ksuderman committed Mar 17, 2024
    Configuration menu
    Copy the full SHA
    db82ef0 View commit details
    Browse the repository at this point in the history

Commits on Apr 18, 2024

  1. Merge branch 'master' into 408-maintenance

    @ksuderman
    ksuderman authored Apr 18, 2024
    Configuration menu
    Copy the full SHA
    a7c1aed View commit details
    Browse the repository at this point in the history

  2. Add newline to the end of the file.

    @ksuderman
    ksuderman committed Apr 18, 2024
    Configuration menu
    Copy the full SHA
    14f190d View commit details
    Browse the repository at this point in the history