Refactor labs with "communities" as root folder

galaxyproject · Sep 27, 2024 · 5be8e1d · 5be8e1d
1 parent ba1a0c1
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Showing 35 changed files with 4 additions and 2 deletions.
diff --git a/subdomains/genome/CONTRIBUTORS → communities/genome/lab/CONTRIBUTORS b/subdomains/genome/CONTRIBUTORS → communities/genome/lab/CONTRIBUTORS
diff --git a/subdomains/genome/annotation.yml → communities/genome/lab/annotation.yml b/subdomains/genome/annotation.yml → communities/genome/lab/annotation.yml
diff --git a/subdomains/genome/assembly.yml → communities/genome/lab/assembly.yml b/subdomains/genome/assembly.yml → communities/genome/lab/assembly.yml
diff --git a/subdomains/genome/base.yml → communities/genome/lab/base.yml b/subdomains/genome/base.yml → communities/genome/lab/base.yml
diff --git a/subdomains/genome/data.yml → communities/genome/lab/data.yml b/subdomains/genome/data.yml → communities/genome/lab/data.yml
diff --git a/...ins/genome/static/annotation-overview.png → ...genome/lab/static/annotation-overview.png b/...ins/genome/static/annotation-overview.png → ...genome/lab/static/annotation-overview.png
diff --git a/...mains/genome/static/assembly-overview.png → ...s/genome/lab/static/assembly-overview.png b/...mains/genome/static/assembly-overview.png → ...s/genome/lab/static/assembly-overview.png
diff --git a/subdomains/genome/static/custom.css → communities/genome/lab/static/custom.css b/subdomains/genome/static/custom.css → communities/genome/lab/static/custom.css
diff --git a/subdomains/genome/static/logo.png → communities/genome/lab/static/logo.png b/subdomains/genome/static/logo.png → communities/genome/lab/static/logo.png
diff --git a/subdomains/genome/templates/conclusion.html → ...ties/genome/lab/templates/conclusion.html b/subdomains/genome/templates/conclusion.html → ...ties/genome/lab/templates/conclusion.html
diff --git a/subdomains/genome/templates/footer.html → communities/genome/lab/templates/footer.html b/subdomains/genome/templates/footer.html → communities/genome/lab/templates/footer.html
diff --git a/subdomains/genome/templates/intro.html → communities/genome/lab/templates/intro.html b/subdomains/genome/templates/intro.html → communities/genome/lab/templates/intro.html
@@ -24,7 +24,7 @@ <h5 class="modal-title">Galaxy {{ site_name }}</h5>
 
           <div class="my-3">
             Switch between sites quickly using the dropdown in Galaxy {{ site_name }}'s main navigation bar (note, if your Galaxy server does not have this, please request that they install the "Site Switcher" plugin from Galaxy Australia):
-            <img class="w-100 my-3 mx-auto" src="https://github.com/galaxyproject/galaxy-codex/blob/main/subdomains/assets/site-switcher.png?raw=true" alt="Switch site button">
+            <img class="w-100 my-3 mx-auto" src="https://github.com/galaxyproject/galaxy-codex/blob/main/labs/assets/site-switcher.png?raw=true" alt="Switch site button">
           </div>
 
           <p><a class="ga-btn" href="{{ galaxy_base_url }}" target="_blank">Take me back to Galaxy {{ site_name }}</a></p>

diff --git a/subdomains/genome/usegalaxy.org.au.yml → communities/genome/lab/usegalaxy.org.au.yml b/subdomains/genome/usegalaxy.org.au.yml → communities/genome/lab/usegalaxy.org.au.yml
diff --git a/...segalaxy.org.au/templates/conclusion.html → ...segalaxy.org.au/templates/conclusion.html b/...segalaxy.org.au/templates/conclusion.html → ...segalaxy.org.au/templates/conclusion.html
diff --git a/...me/usegalaxy.org.au/templates/footer.html → ...ab/usegalaxy.org.au/templates/footer.html b/...me/usegalaxy.org.au/templates/footer.html → ...ab/usegalaxy.org.au/templates/footer.html
diff --git a/...ome/usegalaxy.org.au/templates/intro.html → ...lab/usegalaxy.org.au/templates/intro.html b/...ome/usegalaxy.org.au/templates/intro.html → ...lab/usegalaxy.org.au/templates/intro.html
diff --git a/subdomains/proteomics/CONTRIBUTORS → communities/proteomics/lab/CONTRIBUTORS b/subdomains/proteomics/CONTRIBUTORS → communities/proteomics/lab/CONTRIBUTORS
diff --git a/subdomains/proteomics/base.yml → communities/proteomics/lab/base.yml b/subdomains/proteomics/base.yml → communities/proteomics/lab/base.yml
diff --git a/...mics/sections/conversion_modification.yml → .../lab/sections/conversion_modification.yml b/...mics/sections/conversion_modification.yml → .../lab/sections/conversion_modification.yml
diff --git a/subdomains/proteomics/sections/data.yml → communities/proteomics/lab/sections/data.yml b/subdomains/proteomics/sections/data.yml → communities/proteomics/lab/sections/data.yml
diff --git a/...roteomics/sections/database_searching.yml → ...omics/lab/sections/database_searching.yml b/...roteomics/sections/database_searching.yml → ...omics/lab/sections/database_searching.yml
diff --git a/...omics/sections/dda_standardised_tools.yml → ...s/lab/sections/dda_standardised_tools.yml b/...omics/sections/dda_standardised_tools.yml → ...s/lab/sections/dda_standardised_tools.yml
diff --git a/subdomains/proteomics/sections/dda_tmt.yml → ...ities/proteomics/lab/sections/dda_tmt.yml b/subdomains/proteomics/sections/dda_tmt.yml → ...ities/proteomics/lab/sections/dda_tmt.yml
diff --git a/...omics/sections/dia_standardised_tools.yml → ...s/lab/sections/dia_standardised_tools.yml b/...omics/sections/dia_standardised_tools.yml → ...s/lab/sections/dia_standardised_tools.yml
diff --git a/subdomains/proteomics/static/custom.css → communities/proteomics/lab/static/custom.css b/subdomains/proteomics/static/custom.css → communities/proteomics/lab/static/custom.css
diff --git a/subdomains/proteomics/static/logo.png → communities/proteomics/lab/static/logo.png b/subdomains/proteomics/static/logo.png → communities/proteomics/lab/static/logo.png
diff --git a/...ains/proteomics/templates/conclusion.html → .../proteomics/lab/templates/conclusion.html b/...ains/proteomics/templates/conclusion.html → .../proteomics/lab/templates/conclusion.html
diff --git a/subdomains/proteomics/templates/footer.html → ...ties/proteomics/lab/templates/footer.html b/subdomains/proteomics/templates/footer.html → ...ties/proteomics/lab/templates/footer.html
diff --git a/subdomains/proteomics/templates/intro.html → ...ities/proteomics/lab/templates/intro.html b/subdomains/proteomics/templates/intro.html → ...ities/proteomics/lab/templates/intro.html
@@ -93,7 +93,7 @@ <h5 class="modal-title">Galaxy {{ site_name }} {{ lab_name }}</h5>
           and {{ lab_name }}
           (<a href="galaxy_base_url">{{ subdomain }}.{{ root_domain }}</a>)
           is easy - look for the icon in the top navigation bar to switch between sites:
-          <img class="w-100 my-3 mx-auto" src="https://github.com/galaxyproject/galaxy-codex/blob/main/subdomains/assets/site-switcher.png?raw=true" alt="Switch site button">
+          <img class="w-100 my-3 mx-auto" src="https://github.com/galaxyproject/galaxy-codex/blob/main/labs/assets/site-switcher.png?raw=true" alt="Switch site button">
         </p>
 
         {% if site_name == 'Australia' %}

diff --git a/subdomains/proteomics/usegalaxy.org.au.yml → ...ities/proteomics/lab/usegalaxy.org.au.yml b/subdomains/proteomics/usegalaxy.org.au.yml → ...ities/proteomics/lab/usegalaxy.org.au.yml
diff --git a/...segalaxy.org.au/templates/conclusion.html → ...segalaxy.org.au/templates/conclusion.html b/...segalaxy.org.au/templates/conclusion.html → ...segalaxy.org.au/templates/conclusion.html
diff --git a/...cs/usegalaxy.org.au/templates/footer.html → ...ab/usegalaxy.org.au/templates/footer.html b/...cs/usegalaxy.org.au/templates/footer.html → ...ab/usegalaxy.org.au/templates/footer.html
diff --git a/subdomains/assets/site-switcher.png → labs/assets/site-switcher.png b/subdomains/assets/site-switcher.png → labs/assets/site-switcher.png
diff --git a/labs/genome b/labs/genome
@@ -0,0 +1 @@
+../communities/genome/lab
diff --git a/labs/proteomics b/labs/proteomics
@@ -0,0 +1 @@
+../communities/proteomics/lab