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Pull requests: galaxyproject/tools-iuc

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349 Open 5,701 Closed
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Pull requests list

Salmon DM: add missing loc.sample file
#7375 opened Oct 20, 2025 by bernt-matthias Loading…
3 of 5 tasks
Updating tools/bigscape from version 1.1.9 to 2.0.0
#7372 opened Oct 20, 2025 by gxydevbot Loading…
1
[WIP] odgi update + new tools
#7371 opened Oct 19, 2025 by bgruening • Draft
changed core_gene_alignment and pan_genome_reference format to fasta
#7370 opened Oct 19, 2025 by FMG0411 • Draft
3 of 5 tasks
1
update hap.py
#7369 opened Oct 19, 2025 by bgruening Loading…
5 tasks
5
added otak_tool
#7367 opened Oct 18, 2025 by Deeptivarshney Loading…
2 of 4 tasks
Fix sanitizer from SemiBin
#7366 opened Oct 17, 2025 by SantaMcCloud Loading…
3 of 5 tasks
5
Split metawrap tool
#7365 opened Oct 17, 2025 by bernt-matthias Loading…
3 of 5 tasks
2
Add memory flag to metaSPAdes for better RAM handeling
#7363 opened Oct 15, 2025 by SantaMcCloud Loading…
3 of 5 tasks
17
Fix cramino testdata
#7362 opened Oct 15, 2025 by lsterck Loading…
3 of 5 tasks
1
Updating tools/muon from version 0.1.6 to 0.1.7
#7351 opened Oct 9, 2025 by gxydevbot Loading…
1
Update Semibin 2.0.2 to 2.2.0
#7347 opened Oct 8, 2025 by SantaMcCloud Loading…
3 of 5 tasks
15
Add tabular output to tb-profiler collate
#7345 opened Oct 8, 2025 by buhlentozini Loading…
9
Updating tools/staramr from version 0.11.0 to 0.11.1
#7343 opened Oct 7, 2025 by gxydevbot Loading…
2
Update coreprofiler db
#7341 opened Oct 6, 2025 by hugolefeuvre Loading…
3 of 5 tasks
13
Fixing tools/ena_upload_cli - credential fetching fix
#7340 opened Oct 6, 2025 by bedroesb Loading…
2 of 5 tasks
8
Updating tools/trycycler from version 0.5.5 to 0.5.6
#7336 opened Oct 6, 2025 by gxydevbot Loading…
1
Updating tools/rp2paths from version 2.0.0 to 2.1.0
#7333 opened Oct 6, 2025 by gxydevbot Loading…
1
Updating tools/genomescope from version 2.0.1 to 2.1.0
#7332 opened Oct 6, 2025 by gxydevbot Loading…
2
JBrowse2 polishing
#7330 opened Oct 4, 2025 by abretaud Loading…
3 of 5 tasks
8
Adding a new tool: read2tree
#7318 opened Sep 30, 2025 by nromashchenko Loading…
3 of 5 tasks
20
Updating tools/beacon2 from version 2.0.0 to 2.0.5
#7311 opened Sep 29, 2025 by gxydevbot Loading…
1
Adds wrapper features for Multiqc to support mosdepth
#7309 opened Sep 26, 2025 by bwlang • Draft
3 of 5 tasks
3
New Addition: ripples and general update to latest version of usher
#7306 opened Sep 25, 2025 by lsterck Loading…
4 of 5 tasks
16
New tool addition: Samestr2
#7304 opened Sep 25, 2025 by xens25 • Draft
5 tasks
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