##scripts related to the manuscript by Zgadzaj, Garrido-Oter et al., 2016

###scripts and configuration files to perform analysis of 16S raw sequencing reads:

config_1416.sh
config_1018.sh
config_all.txt
config_2186.txt
16s.sh
16s.functions.sh

###scripts to perform diversity analyses:

alpha_diversity.R
beta_diversity.R
cpcoa.R
cpcoa_only_gifu_nodules.R
cpcoa_depleted_nodule_OTUs.R

###script to perform enrichment tests, Manhattan plots and ternary plots:

enrichment_analyses.R

###raw sequencing data can be downloaded here:

http://www.at-sphere.com/download/lotus_raw_data.tar.gz