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[ENH] A finetuning notebook for <code>AptaNet</code>

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#226 In gc-os-ai/pyaptamer;

· satvshr opened on Dec 28, 2025

[INVALID] remove all inits from <code>pyaptamer\datasets\_loaders\__init__.py</code>

invalidThis doesn't seem rightThis doesn't seem right

Status: Open.

Feature

#225 In gc-os-ai/pyaptamer;

· satvshr opened on Dec 28, 2025

[ENH] Reduce code duplication in AptaTransLightning class

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#224 In gc-os-ai/pyaptamer;

· NennoMP opened on Dec 17, 2025

[DOC] Improve MCTS and TreeNode docstrings

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#221 In gc-os-ai/pyaptamer;

· NennoMP opened on Dec 17, 2025

[ENH] Add early-stopping mechanism when training AptaTrans

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#215 In gc-os-ai/pyaptamer;

· NennoMP opened on Dec 11, 2025

[ENH] Remove <code>Structure</code> support for packaged pdbs

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#208 In gc-os-ai/pyaptamer;

· satvshr opened on Dec 1, 2025

[ENH] Extend <code>MoleculeLoader</code>

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#202 In gc-os-ai/pyaptamer;

· satvshr opened on Nov 29, 2025

[ENH] Get rid of <code>load_hf_dataset</code> and replace it with <code>load_hf_to_dataset</code>

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#201 In gc-os-ai/pyaptamer;

· satvshr opened on Nov 29, 2025

[BUG] pdb sequences returned from <code>MoleculeLoader</code> are wrong

bugSomething isn't workingSomething isn't working

Status: Open.

Bug

#200 In gc-os-ai/pyaptamer;

· satvshr opened on Nov 29, 2025

[ENH] Add 5NU7 and 1BRQ

enhancementNew feature or requestNew feature or request

Status: Open.

#197 In gc-os-ai/pyaptamer;

· satvshr opened on Nov 21, 2025

[BUG] AptaTrans aptamer recommendation does not work for depth smaller than 3

bugSomething isn't workingSomething isn't working

Status: Open.

Bug

#196 In gc-os-ai/pyaptamer;

· NennoMP opened on Nov 18, 2025

Contact pdbcleaner authors

Status: Open.

#195 In gc-os-ai/pyaptamer;

· fkiraly opened on Nov 13, 2025