converter example using prefixmaps (which uses curies package), remov…

…es ontobio

python/Makefile

@@ -42,7 +42,7 @@ f-%: tests/data/f-%.ttl
 	python ./gocam_validator.py $< && exit -1 || echo FAILED AS EXPECTED
 
 gen-python:
-	rm -f shex_json_linkml.py && gen-python schema/shex_term_metadata_json_linkml.yaml > shex_term_metadata_json_linkml.py
+	rm -f shex_json_linkml.py && gen-python schema/shex_terms_metadata_json_linkml.yaml > shex_terms_metadata_json_linkml.py
 
 #gen-pydantic:
 #	rm -f shex_json_linkml.py && gen-pydantic schema/shex_json_linkml.yaml > shex_json_linkml.py

python/json_export.py

@@ -2,6 +2,7 @@
 import json
 from pathlib import Path
 import os
+from prefixmaps import load_converter
 from ontobio.rdfgen.assoc_rdfgen import prefix_context
 #from prefixcommons.curie_util import contract_uri
 
@@ -18,12 +19,15 @@
 
 
 OUT_JSON = os.path.join('../shapes/json/shex_dump.json')
-converter = Converter.from_prefix_map(prefix_context)
+
+converter = load_converter("merged")
+# if you need to add a prefix specific to this codebase, not in merged.csv above, then you
+# can do things like this:
+# converter.add_prefix("Orphanet", "https://www.orpha.net/en/disease/detail/", merge=True)
 
 
 def get_suffix(uri):
     suffix = converter.compress(uri)
-
     return suffix if suffix else uri