Update to match latest doc from Simran

manifest

@@ -9,7 +9,7 @@ description=Normalizes the median fluorescence intensity (MFI) values in a raw p
 documentationUrl=https://genepattern.github.io/tfsites.DefineTfSites/v1/
 fileFormat=
 job.cpuCount=
-job.docker.image=genepattern/tfsites\:0.9
+job.docker.image=genepattern/tfsites\:0.10
 job.memory=
 job.walltime=
 language=any
@@ -18,7 +18,7 @@ os=any
 p1_MODE=IN
 p1_TYPE=FILE
 p1_default_value=
-p1_description=Input file containing the raw PBM dataset. This file is the output of a protein-binding microarray experiment obtained from uniPROBE.
+p1_description=File containing the raw PBM dataset. This file is the output of a protein-binding microarray experiment obtained from uniPROBE.
 p1_fileFormat=.tsv
 p1_flag=
 p1_name=raw.PBM.data
@@ -28,6 +28,7 @@ p1_prefix=
 p1_prefix_when_specified=
 p1_type=java.io.File
 p1_value=
+
 p2_MODE=
 p2_TYPE=TEXT
 p2_default_value=NNGGAWNN
@@ -41,10 +42,11 @@ p2_prefix=
 p2_prefix_when_specified=
 p2_type=java.lang.String
 p2_value=
+
 p3_MODE=
 p3_TYPE=Integer
 p3_default_value=1
-p3_description=Number of the column containing the forward DNA sequence in the input PBM file (1-indexed, 1 is the first column).
+p3_description=Number of the column containing the forward DNA sequence in the raw PBM file (1-indexed, 1 is the first column).
 p3_fileFormat=
 p3_flag=
 p3_name=column.of.PBM.k-mers
@@ -58,7 +60,7 @@ p3_value=
 p4_MODE=
 p4_TYPE=Integer
 p4_default_value=4
-p4_description=Number of the column containing the MFI signal in the input PBM file (1-indexed, 1 is the first column).
+p4_description=Number of the column containing the median fluorescence intensity (MFI) signal in the raw PBM file (1-indexed, 1 is the first column).
 p4_fileFormat=
 p4_flag=
 p4_name=column.of.PBM.MFI
@@ -100,7 +102,7 @@ p6_value=FALSE\=FALSE;TRUE\=TRUE
 p7_MODE=
 p7_TYPE=TEXT
 p7_default_value=FALSE
-p7_description=If True, only report k-mers abiding by the IUPAC definition. If False, report all k-mers.
+p7_description=If True, only report k-mers abiding by the binding site definition. If False, report all k-mers.
 p7_fileFormat=
 p7_flag=
 p7_name=report.sites.only
@@ -114,7 +116,7 @@ p7_value=FALSE\=FALSE;TRUE\=TRUE
 p8_MODE=
 p8_TYPE=TEXT
 p8_default_value=FALSE
-p8_description=If True, normalize the data so the minimum affinity value is set to 0.001. The normalized affinity values will range between 0.001 and 1.0. If False, the values will range between 0 and 1.0.
+p8_description=If True, enforce the relative affinities to range between 0 and 1. If False, the original range of the relative affinities will remain the same.
 p8_fileFormat=
 p8_flag=
 p8_name=enforce.minimum.relative.affinity
@@ -128,7 +130,7 @@ p8_value=FALSE\=FALSE;TRUE\=TRUE
 p9_MODE=
 p9_TYPE=TEXT
 p9_default_value=<raw.PBM.data_basename>.aff-histograms.png
-p9_description=Name of the output graph containing 3 histogram plots of the normalized affinity values.
+p9_description=Name of the output graph containing 3 histogram plots of the relative affinity values.
 p9_fileFormat=
 p9_flag=
 p9_name=histograms.of.relative.affinity.output.filename