299 add qc for nanopore data #344
Open
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
…icine-sweden/jasen into 299-add-qc-for-nanopore-data confusion with committing
|
Confusion with commits, need to check what happened before reviewing and merging |
|
No worries, make it a draft until you're ready for review, so we don't use the CI resources:) |
ryanjameskennedy
requested changes
Sep 10, 2024
ryanjameskennedy
requested changes
Dec 11, 2024
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Description
Added module with NanoPlot to check quality of raw input reads produced by ONT technology.
Summary of the changes made:
added new module script, added container URL to Makefile, changed bacterial base workflow script
Primary function of PR
Testing
The pipeline has been run with test data, NanoPlot report is produced in the nanoplot output folder.
Sign-offs