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fix-linting.yml
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240 workflow runs

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Unstable assembly outputs in tests Fix linting from a comment #243: Issue comment #452 (comment) created by fellen31
March 4, 2025 09:04 2s
March 4, 2025 09:04 2s
A "extra_vep_options" specifically for SV? Fix linting from a comment #242: Issue comment #588 (comment) created by A97paupic
March 3, 2025 15:20 3s
March 3, 2025 15:20 3s
A "extra_vep_options" specifically for SV? Fix linting from a comment #241: Issue comment #588 (comment) created by fellen31
March 3, 2025 14:41 3s
March 3, 2025 14:41 3s
error in CALL_SVS:BCFTOOLS_SORT Fix linting from a comment #240: Issue comment #587 (comment) created by A97paupic
February 28, 2025 15:07 2s
February 28, 2025 15:07 2s
error in CALL_SVS:BCFTOOLS_SORT Fix linting from a comment #239: Issue comment #587 (comment) created by fellen31
February 28, 2025 15:03 3s
February 28, 2025 15:03 3s
filter_vep is too slow and should be replaced Fix linting from a comment #238: Issue comment #522 (comment) created by fellen31
February 28, 2025 11:40 3s
February 28, 2025 11:40 3s
Add SVDB build and export Fix linting from a comment #237: Issue comment #372 (comment) created by fellen31
February 18, 2025 14:14 2s
February 18, 2025 14:14 2s
Replace local module WhatsHap with nf-core version Fix linting from a comment #236: Issue comment #106 (comment) created by fellen31
February 18, 2025 14:12 3s
February 18, 2025 14:12 3s
Validate and optimize paraphrase Fix linting from a comment #235: Issue comment #103 (comment) created by fellen31
February 18, 2025 14:11 3s
February 18, 2025 14:11 3s
Run phasing in parallel Fix linting from a comment #234: Issue comment #125 (comment) created by fellen31
February 18, 2025 14:07 3s
February 18, 2025 14:07 3s
Remove or replace pacbio/hificnv with nf-core module Fix linting from a comment #233: Issue comment #199 (comment) created by fellen31
February 18, 2025 14:06 3s
February 18, 2025 14:06 3s
Consistently use meta.id for references Fix linting from a comment #232: Issue comment #322 (comment) created by fellen31
February 18, 2025 14:05 3s
February 18, 2025 14:05 3s
Stranger not working for certain variants with multiple individuals per family Fix linting from a comment #231: Issue comment #562 (comment) created by fellen31
February 18, 2025 13:57 3s
February 18, 2025 13:57 3s
Genmod annotate chromosome names missmatch for mitochondrial variants Fix linting from a comment #230: Issue comment #499 (comment) created by fellen31
February 18, 2025 13:55 3s
February 18, 2025 13:55 3s
GENOMICMEDICINESWEDEN_NALLO:NALLO:SHORT_VARIANT_CALLING:DEEPVARIANT 'Path value cannot be null' Fix linting from a comment #229: Issue comment #519 (comment) created by fellen31
February 18, 2025 13:54 2s
February 18, 2025 13:54 2s
Replace ADD_FOUND_IN_TAG with vcfexpress Fix linting from a comment #228: Issue comment #527 (comment) created by fellen31
February 18, 2025 13:52 3s
February 18, 2025 13:52 3s
[User Story] Improve runtime Fix linting from a comment #227: Issue comment #184 (comment) created by fellen31
February 18, 2025 13:48 2s
February 18, 2025 13:48 2s
Mapped de novo assembly output Fix linting from a comment #226: Issue comment #442 (comment) created by fellen31
February 18, 2025 13:45 3s
February 18, 2025 13:45 3s
Add stub to DIPCALL Fix linting from a comment #225: Issue comment #461 (comment) created by fellen31
February 18, 2025 13:44 3s
February 18, 2025 13:44 3s
[User Story] Clean up publishdirs Fix linting from a comment #224: Issue comment #54 (comment) created by fellen31
February 18, 2025 13:43 2s
February 18, 2025 13:43 2s
Not able to run nallo without --vep_cache Fix linting from a comment #223: Issue comment #547 (comment) created by fellen31
February 17, 2025 13:26 3s
February 17, 2025 13:26 3s
Fix pipeline not running without --vep_cache Fix linting from a comment #222: Issue comment #553 (comment) created by fellen31
February 17, 2025 12:10 3s
February 17, 2025 12:10 3s
Rename Sniffles2 to Sniffles in metro-map Fix linting from a comment #221: Issue comment #559 (comment) created by fellen31
February 13, 2025 07:26 3s
February 13, 2025 07:26 3s
Rename Sniffles2 to Sniffles in metro-map Fix linting from a comment #220: Issue comment #559 (comment) created by dnil
February 13, 2025 07:20 2s
February 13, 2025 07:20 2s
Consistent output file naming compatible with Housekeeper Fix linting from a comment #219: Issue comment #154 (comment) created by fellen31
February 11, 2025 13:29 1s
February 11, 2025 13:29 1s