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Add contributors to nextflow.config #574

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Feb 26, 2025
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1 change: 1 addition & 0 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -13,6 +13,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- [#537](https://github.com/genomic-medicine-sweden/nallo/pull/537) - Added per-base depth output in d4 format from mosdepth
- [#542](https://github.com/genomic-medicine-sweden/nallo/pull/542) - Added a hidden parameter `--publish_unannotated_family_svs`
- [#544](https://github.com/genomic-medicine-sweden/nallo/pull/544) - Added `--skip_sv_calling` parameter to skip sv_calling subworkflow
- [#574](https://github.com/genomic-medicine-sweden/nallo/pull/574) - Added contributors to `nextflow.config`

### `Changed`

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67 changes: 60 additions & 7 deletions nextflow.config
Original file line number Diff line number Diff line change
Expand Up @@ -274,16 +274,69 @@ dag {

manifest {
name = 'genomic-medicine-sweden/nallo'
author = """Felix Lenner""" // The author field is deprecated from Nextflow version 24.10.0, use contributors instead
contributors = [
// TODO nf-core: Update the field with the details of the contributors to your pipeline. New with Nextflow version 24.10.0
[
name: 'Ramprasad Neethiraj',
affiliation: 'School of Engineering sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, Stockholm, Sweden; Science for Life Laboratory, Department of Microbiology, Tumour and Cell Biology, Karolinska Institutet, Stockholm, Sweden',
email: 'rne@kth.se',
github: 'https://github.com/ramprasadn',
contribution: ['contributor'],
orcid: 'https://orcid.org/0000-0001-7313-3734'
],
[
name: 'Anders Jemt',
affiliation: 'Genomics Medicine Center Karolinska, Karolinska University Hospital, Stockholm, Sweden; Science for Life Laboratory, Department of Microbiology, Tumour and Cell Biology, Karolinska Institutet, Stockholm, Sweden',
email: 'anders.jemt@scilifelab.se',
github: 'https://github.com/jemten',
contribution: ['contributor'],
orcid: 'https://orcid.org/0000-0002-2219-0197'
],
[
name: 'Lucía Peña-Pérez',
affiliation: 'Center for Inherited Metabolic Diseases, Karolinska University Hospital, Stockholm, Sweden; Department of Molecular Medicine and Surgery, Karolinska Institutet, Stockholm, Sweden',
email: 'lucia.pena.perez@scilifelab.se',
github: 'https://github.com/Lucpen',
contribution: ['contributor'],
orcid: 'https://orcid.org/0000-0002-5044-7754'
],
[
name: 'Annick Renevey',
affiliation: 'Science for Life Laboratory, Department of Microbiology, Tumour and Cell Biology, Karolinska Institutet, Stockholm, Sweden',
email: 'annick.renevey@scilifelab.se',
github: 'https://github.com/rannick',
contribution: ['contributor'],
orcid: 'https://orcid.org/0000-0001-7411-6063'
],
[
name: 'Peter Pruisscher',
affiliation: 'Genomics Medicine Center Karolinska, Karolinska University Hospital, Stockholm, Sweden; Science for Life Laboratory, Department of Microbiology, Tumour and Cell Biology, Karolinska Institutet, Stockholm, Sweden',
email: 'peter.pruisscher@scilifelab.se',
github: 'https://github.com/peterpru',
contribution: ['contributor'],
orcid: 'https://orcid.org/0000-0002-6987-5839'
],
[
name: 'Padraic Corcoran',
affiliation: 'Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden. Clinical genomics, Science for life laboratory, Uppsala University.',
email: 'padraic.corcoran@scilifelab.uu.se',
github: 'https://github.com/padraicc',
contribution: ['contributor'],
],
[
name: 'Daniel Schmitz',
affiliation: 'Clinical Genomics Gothenburg, Science for Life Laboratory, Sahlgrenska Academy, University of Gothenburg.',
email: 'daniel.schmitz@gu.se',
github: 'https://github.com/Schmytzi',
contribution: ['contributor'],
orcid: 'https://orcid.org/0000-0003-4480-891X'
],
[
name: 'Felix Lenner',
affiliation: '',
email: '',
github: '',
contribution: [], // List of contribution types ('author', 'maintainer' or 'contributor')
orcid: ''
affiliation: 'Department of Immunology, Genetics and Pathology, Uppsala University, Sweden; Science for Life Laboratory, Department of Microbiology, Tumour and Cell Biology, Karolinska Institutet, Stockholm, Sweden',
email: 'felix.lenner@scilifelab.se',
github: 'https://github.com/fellen31',
contribution: ['author','maintainer'],
orcid: 'https://orcid.org/0000-0002-9594-0710'
],
]
homePage = 'https://github.com/genomic-medicine-sweden/nallo'
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