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Merge master into dev #583

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merged 6 commits into from
Feb 27, 2025

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fellen31
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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

fellen31 and others added 5 commits January 15, 2025 14:42
…en#553)

* Fix pipeline can't run without

* CHANGELOG

* docs

* docs

* update snaps

* fix CI

* Update CHANGELOG.md

* changelog date

* Add vep_plugin_files to files check

* CHANGELOG

* Update CHANGELOG.md

* always failing CI because of nf-core update
@fellen31 fellen31 marked this pull request as ready for review February 27, 2025 10:20
@fellen31 fellen31 requested a review from a team as a code owner February 27, 2025 10:20
@fellen31 fellen31 merged commit 8bf3fae into genomic-medicine-sweden:dev Feb 27, 2025
25 checks passed
@fellen31 fellen31 deleted the merge-master-into-dev branch February 27, 2025 10:31
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2 participants