sci-libs/gdcm: version and revbump

updated PYTHON_COMPAT, marked tests as failing Signed-off-by: Horea Christian <chr@chymera.eu>
gentoo · Feb 14, 2025 · 110f22b · 110f22b
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diff --git a/sci-libs/gdcm/Manifest b/sci-libs/gdcm/Manifest
@@ -1,2 +1,3 @@
 DIST gdcm-3.0.14.tar.bz2 2992355 BLAKE2B a97209a8bb6896095bfc59ac974b667386c8711f20118252567cf983f15165d259da7858ccfd6bfdfbb25194d7687c98512953b480913acec4bf6d176af7a005 SHA512 9c7d70723d288bf116a8b594c02dd965a4e80476e1c79a7c3cbd09584a229c83ad67f082c9b286305e3bb64150c8267ced06b5fb963adbeeb36e383f76612220
+DIST gdcm-3.0.24.tar.bz2 3139207 BLAKE2B c18850a55cb591c1dea663e4799c763c2c4a0180ed460538d1cdb721be0fccc8b9a7cf29b4648164c6251b95d59935676a6655e43e25ab7e28d5261d5732dd78 SHA512 727beb50df893bfc1f693da918d9aafe92df0328dd9a80f074dea43c4f82608999f2aea5f970c5410512fd2791a7159762e5e0c83cc6295bd35465b26dd5f376
 DIST gdcmData.tar.gz 121157465 BLAKE2B 19b13efc2094d3e373f0f658f1120b1c83ea6da1be73fb392b815433725b4a6db2debb9ab7d9f2caa665637f152f70694cdf226c934850dfda344107050a14a6 SHA512 ddc67a7a0b41b2d6e1e03defb6fb8a06ceeb2e9dd9bb47dfa4f7283d79df7c1e52577b799c00e930719ae6cdda46bded9497a67b8241359f238f5366085ec9ee
diff --git a/sci-libs/gdcm/gdcm-3.0.14-r1.ebuild b/sci-libs/gdcm/gdcm-3.0.14-r1.ebuild
@@ -0,0 +1,125 @@
+# Copyright 2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{10..12} )
+
+inherit cmake flag-o-matic python-single-r1
+
+DESCRIPTION="Cross-platform DICOM implementation"
+HOMEPAGE="http://gdcm.sourceforge.net/"
+SRC_URI="https://downloads.sourceforge.net/gdcm/${P}.tar.bz2
+	test? ( https://downloads.sourceforge.net/gdcm/gdcmData.tar.gz )"
+# 3.0.14: .bz2 is broken, should be checked in next release
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="doc python test vtk"
+# Tests fail https://bugs.gentoo.org/948517
+RESTRICT="test"
+
+DEPEND="
+	app-text/poppler:0=[cxx]
+	dev-libs/expat:0=
+	dev-libs/json-c:0=
+	dev-libs/libxml2:2=
+	dev-libs/openssl:0=
+	>=media-libs/charls-2.0.0:0=
+	>=media-libs/openjpeg-2.0.0:2=
+	sys-apps/util-linux:0=
+	sys-libs/zlib:0=
+	python? ( ${PYTHON_DEPS} )
+	vtk? (
+		sci-libs/vtk[rendering]
+		python? (
+			sci-libs/vtk[python,${PYTHON_SINGLE_USEDEP}]
+		)
+	)
+"
+RDEPEND="${DEPEND}"
+BDEPEND="
+	dev-libs/libxslt
+	app-text/docbook-xsl-ns-stylesheets
+	doc? ( app-text/doxygen[dot] )
+	python? (
+		${PYTHON_DEPS}
+		>=dev-lang/swig-3.0.7
+	)"
+
+REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
+
+PATCHES=(
+	"${FILESDIR}/gdcm_support_vtk9.patch"
+	"${FILESDIR}/gdcm-3.0.14-include-math-h.patch"
+)
+
+pkg_setup() {
+	use python && python-single-r1_pkg_setup
+}
+
+src_prepare() {
+	# drop unbundled libs
+	local -a DROPS=( gdcmcharls gdcmexpat gdcmopenjpeg gdcmuuid gdcmzlib getopt pvrg KWStyle Release )
+	local x
+	for x in "${DROPS[@]}"; do
+		ebegin "Dropping bundled ${x#gdcm}"
+		rm -r "Utilities/${x}" || die
+		sed -i "s,^[ \t]*APPEND_COPYRIGHT(\\\${CMAKE_CURRENT_SOURCE_DIR}/${x}/,#&," "Utilities/CMakeLists.txt" || die
+		eend $?
+	done
+	find Utilities -mindepth 1 -maxdepth 1 '!' -name doxygen '!' -name VTK -type d \
+		-exec ewarn "Using bundled" {} ';' || die
+
+	# fix charls include case
+	sed -i 's:CharLS/charls\.h:charls/charls.h:' CMake/FindCharLS.cmake Utilities/gdcm_charls.h || die
+	sed -i 's:NAMES CharLS:NAMES charls:' CMake/FindCharLS.cmake || die
+
+	# Use prefixed socket++ (to avoid potential conflicts)
+	sed -i '/target_link_libraries(/s/socketxx/gdcm&/' \
+		Source/MessageExchangeDefinition/CMakeLists.txt \
+		Applications/Cxx/CMakeLists.txt \
+		|| die
+
+	append-cxxflags -std=gnu++20
+	cmake_src_prepare
+}
+
+src_configure() {
+	local mycmakeargs=(
+		$(usex doc "-DGDCM_PDF_DOCUMENTATION=OFF" "")
+		$(usex python "-DGDCM_DEFAULT_PYTHON_VERSION=${EPYTHON#python}" "")
+		-DBUILD_SHARED_LIBS=OFF
+		-DCMAKE_SKIP_RPATH=ON
+		-DGDCM_BUILD_APPLICATIONS=ON
+		-DGDCM_BUILD_EXAMPLES=OFF
+		-DGDCM_BUILD_SHARED_LIBS=ON
+		-DGDCM_BUILD_TESTING=$(usex test)
+		-DGDCM_DATA_ROOT="${WORKDIR}/gdcmData"
+		-DGDCM_DOCUMENTATION=$(usex doc)
+		-DGDCM_INSTALL_DOC_DIR="share/doc/${P}"
+		-DGDCM_INSTALL_LIB_DIR="$(get_libdir)"
+		-DGDCM_INSTALL_PYTHONMODULE_DIR="lib/${EPYTHON}/site-packages"
+		-DGDCM_USE_SYSTEM_CHARLS=ON
+		-DGDCM_USE_SYSTEM_EXPAT=ON
+		-DGDCM_USE_SYSTEM_JSON=ON
+		-DGDCM_USE_SYSTEM_LIBXML2=ON
+		-DGDCM_USE_SYSTEM_LJPEG=OFF
+		-DGDCM_USE_SYSTEM_OPENJPEG=ON
+		-DGDCM_USE_SYSTEM_OPENSSL=ON
+		-DGDCM_USE_SYSTEM_PAPYRUS3=OFF
+		-DGDCM_USE_SYSTEM_POPPLER=ON
+		-DGDCM_USE_SYSTEM_SOCKETXX=OFF
+		-DGDCM_USE_SYSTEM_UUID=ON
+		-DGDCM_USE_SYSTEM_ZLIB=ON
+		-DGDCM_USE_VTK=$(usex vtk)
+		-DGDCM_WRAP_CSHARP=OFF
+		-DGDCM_WRAP_JAVA=OFF
+		-DGDCM_WRAP_PERL=OFF
+		-DGDCM_WRAP_PHP=OFF
+		-DGDCM_WRAP_PYTHON=$(usex python)
+		-DSOCKETXX_NAMESPACE=GDCMSOCKETXX
+	)
+	cmake_src_configure
+}
diff --git a/sci-libs/gdcm/gdcm-3.0.24.ebuild b/sci-libs/gdcm/gdcm-3.0.24.ebuild
@@ -0,0 +1,126 @@
+# Copyright 2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{10..12} )
+
+inherit cmake flag-o-matic python-single-r1
+
+DESCRIPTION="Cross-platform DICOM implementation"
+HOMEPAGE="http://gdcm.sourceforge.net/"
+SRC_URI="https://downloads.sourceforge.net/gdcm/${P}.tar.bz2
+	test? ( https://downloads.sourceforge.net/gdcm/gdcmData.tar.gz )"
+# 3.0.24: .bz2 is still broken, should be checked again next release
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="doc python test vtk"
+# Tests fail https://bugs.gentoo.org/948517
+RESTRICT="test"
+
+DEPEND="
+	app-text/poppler:0=[cxx]
+	dev-libs/expat:0=
+	dev-libs/json-c:0=
+	dev-libs/libxml2:2=
+	dev-libs/openssl:0=
+	>=media-libs/charls-2.0.0:0=
+	>=media-libs/openjpeg-2.0.0:2=
+	sys-apps/util-linux:0=
+	sys-libs/zlib:0=
+	python? ( ${PYTHON_DEPS} )
+	vtk? (
+		sci-libs/vtk[rendering]
+		python? (
+			sci-libs/vtk[python,${PYTHON_SINGLE_USEDEP}]
+		)
+	)
+"
+RDEPEND="${DEPEND}"
+BDEPEND="
+	dev-libs/libxslt
+	app-text/docbook-xsl-ns-stylesheets
+	doc? ( app-text/doxygen[dot] )
+	python? (
+		${PYTHON_DEPS}
+		dev-lang/swig
+	)"
+
+REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
+
+#PATCHES=(
+#	"${FILESDIR}/gdcm_support_vtk9.patch"
+#	"${FILESDIR}/gdcm-3.0.14-include-math-h.patch"
+#)
+
+pkg_setup() {
+	use python && python-single-r1_pkg_setup
+}
+
+src_prepare() {
+	# drop unbundled libs
+	local -a DROPS=( gdcmcharls gdcmexpat gdcmopenjpeg gdcmuuid gdcmzlib getopt pvrg KWStyle Release )
+	local x
+	for x in "${DROPS[@]}"; do
+		ebegin "Dropping bundled ${x#gdcm}"
+		rm -r "Utilities/${x}" || die
+		sed -i "s,^[ \t]*APPEND_COPYRIGHT(\\\${CMAKE_CURRENT_SOURCE_DIR}/${x}/,#&," "Utilities/CMakeLists.txt" || die
+		eend $?
+	done
+	find Utilities -mindepth 1 -maxdepth 1 '!' -name doxygen '!' -name VTK -type d \
+		-exec ewarn "Using bundled" {} ';' || die
+
+	# fix charls include case
+	#sed -i 's:CharLS/charls\.h:charls/charls.h:' CMake/FindCharLS.cmake Utilities/gdcm_charls.h || die
+	#sed -i 's:NAMES CharLS:NAMES charls:' CMake/FindCharLS.cmake || die
+
+	# Use prefixed socket++ (to avoid potential conflicts)
+	sed -i '/target_link_libraries(/s/socketxx/gdcm&/' \
+		Source/MessageExchangeDefinition/CMakeLists.txt \
+		Applications/Cxx/CMakeLists.txt \
+		|| die
+
+	append-cxxflags "-std=gnu++20"
+
+	cmake_src_prepare
+}
+
+src_configure() {
+	local mycmakeargs=(
+		$(usex doc "-DGDCM_PDF_DOCUMENTATION=OFF" "")
+		$(usex python "-DGDCM_DEFAULT_PYTHON_VERSION=${EPYTHON#python}" "")
+		-DBUILD_SHARED_LIBS=OFF
+		-DCMAKE_SKIP_RPATH=ON
+		-DGDCM_BUILD_APPLICATIONS=ON
+		-DGDCM_BUILD_EXAMPLES=OFF
+		-DGDCM_BUILD_SHARED_LIBS=ON
+		-DGDCM_BUILD_TESTING=$(usex test)
+		-DGDCM_DATA_ROOT="${WORKDIR}/gdcmData"
+		-DGDCM_DOCUMENTATION=$(usex doc)
+		-DGDCM_INSTALL_DOC_DIR="share/doc/${P}"
+		-DGDCM_INSTALL_LIB_DIR="$(get_libdir)"
+		-DGDCM_INSTALL_PYTHONMODULE_DIR="lib/${EPYTHON}/site-packages"
+		-DGDCM_USE_SYSTEM_CHARLS=ON
+		-DGDCM_USE_SYSTEM_EXPAT=ON
+		-DGDCM_USE_SYSTEM_JSON=ON
+		-DGDCM_USE_SYSTEM_LIBXML2=ON
+		-DGDCM_USE_SYSTEM_LJPEG=OFF
+		-DGDCM_USE_SYSTEM_OPENJPEG=ON
+		-DGDCM_USE_SYSTEM_OPENSSL=ON
+		-DGDCM_USE_SYSTEM_PAPYRUS3=OFF
+		-DGDCM_USE_SYSTEM_POPPLER=ON
+		-DGDCM_USE_SYSTEM_SOCKETXX=OFF
+		-DGDCM_USE_SYSTEM_UUID=ON
+		-DGDCM_USE_SYSTEM_ZLIB=ON
+		-DGDCM_USE_VTK=$(usex vtk)
+		-DGDCM_WRAP_CSHARP=OFF
+		-DGDCM_WRAP_JAVA=OFF
+		-DGDCM_WRAP_PERL=OFF
+		-DGDCM_WRAP_PHP=OFF
+		-DGDCM_WRAP_PYTHON=$(usex python)
+		-DSOCKETXX_NAMESPACE=GDCMSOCKETXX
+	)
+	cmake_src_configure
+}