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blackify
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Mittmich committed Sep 18, 2021
1 parent 131ebd5 commit a6f11b5
Showing 1 changed file with 2 additions and 6 deletions.
8 changes: 2 additions & 6 deletions ngs/HiCTools.py
Original file line number Diff line number Diff line change
Expand Up @@ -564,9 +564,7 @@ def extract_windows_different_sizes_iccf(regions, arms, cooler_file, processes=2
arms -> chromosomal arms
"""
# assign arms to regions
snipping_windows = _assign_supports(
regions, bioframe.parse_regions(arms)
).dropna()
snipping_windows = _assign_supports(regions, bioframe.parse_regions(arms)).dropna()
iccf_snipper = cooltools.snipping.CoolerSnipper(
cooler_file, regions=bioframe.parse_regions(arms)
)
Expand All @@ -586,9 +584,7 @@ def extract_windows_different_sizes_obs_exp(
arms -> chromosomal arms
"""
# assign arms to regions
snipping_windows = _assign_supports(
regions, bioframe.parse_regions(arms)
).dropna()
snipping_windows = _assign_supports(regions, bioframe.parse_regions(arms)).dropna()
oe_snipper = cooltools.snipping.ObsExpSnipper(
cooler_file, expected_df, regions=bioframe.parse_regions(arms)
)
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