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getzlab

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  1. rnaseqc rnaseqc Public

    Fast, efficient RNA-Seq metrics for quality control and process optimization

    C++ 178 22

  2. SignatureAnalyzer SignatureAnalyzer Public

    Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.

    Python 81 23

  3. deTiN deTiN Public

    DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.

    Jupyter Notebook 53 22

  4. MutSig2CV MutSig2CV Public

    MutSig2CV from Lawrence et al. 2014

    MATLAB 33 10

  5. dalmatian dalmatian Public

    dalmatian is a collection of high-level companion functions for Firecloud and FISS.

    Python 19 13

  6. CPTAC_PanCan_PTM_2023 CPTAC_PanCan_PTM_2023 Public

    Jupyter Notebook 17 2

Repositories

Showing 10 of 95 repositories
  • Rapid_Autopsy_Convergent_Evolution Public

    This repository contains code necessary to reproduce the results in the Rapid Autopsy Convergent Evolution paper

    getzlab/Rapid_Autopsy_Convergent_Evolution’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Mar 16, 2026
  • canine Public

    A modular, high-performance computing solution to run jobs using SLURM

    getzlab/canine’s past year of commit activity
    Python 8 BSD-3-Clause 6 14 5 Updated Mar 12, 2026
  • cnv_suite Public Forked from ConorMesser/cnv_suite

    Compare, Visualize, and Simulate Copy Number Profiles

    getzlab/cnv_suite’s past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 4 0 2 Updated Feb 24, 2026
  • BTC_epigenetics Public

    epigenetics of BTC atlas

    getzlab/BTC_epigenetics’s past year of commit activity
    0 0 0 0 Updated Feb 19, 2026
  • DLBCL-Classifier Public
    getzlab/DLBCL-Classifier’s past year of commit activity
    Jupyter Notebook 6 2 1 1 Updated Feb 17, 2026
  • getzlab.github.io Public Forked from drummondlab/drummondlab.github.io

    Getz Lab site

    getzlab/getzlab.github.io’s past year of commit activity
    HTML 4 67 0 2 Updated Feb 17, 2026
  • HapASeg Public
    getzlab/HapASeg’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 6 Updated Feb 6, 2026
  • CLL_MRD_growth_kinetics Public

    Collection of notebooks in growth kinetics analysis for CLL MRD

    getzlab/CLL_MRD_growth_kinetics’s past year of commit activity
    Jupyter Notebook 0 2 0 0 Updated Jan 26, 2026
  • SignatureAnalyzer Public

    Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.

    getzlab/SignatureAnalyzer’s past year of commit activity
    Python 81 MIT 23 3 0 Updated Jan 20, 2026
  • gbm_icb_manuscript Public

    Code for reproducing the figures in the Ghannam et al. GBM ICB manuscript

    getzlab/gbm_icb_manuscript’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Nov 12, 2025
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