Merge pull request #168 from ggebbie/more-extensions

More extensions

Manifest.toml

@@ -2,7 +2,13 @@
 
 julia_version = "1.10.5"
 manifest_format = "2.0"
-project_hash = "1c8ed8dc9f020584e587b7572206ea60e52737dc"
+project_hash = "2c942afc5479023e990373bb09c3cb54316c991b"
+
+[[deps.AMD]]
+deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"]
+git-tree-sha1 = "45a1272e3f809d36431e57ab22703c6896b8908f"
+uuid = "14f7f29c-3bd6-536c-9a0b-7339e30b5a3e"
+version = "0.5.3"
 
 [[deps.Adapt]]
 deps = ["LinearAlgebra", "Requires"]
@@ -83,6 +89,11 @@ git-tree-sha1 = "19b98ee7e3db3b4eff74c5c9c72bf32144e24f10"
 uuid = "0b7ba130-8d10-5ba8-a3d6-c5182647fed9"
 version = "1.21.5+0"
 
+[[deps.BufferedStreams]]
+git-tree-sha1 = "6863c5b7fc997eadcabdbaf6c5f201dc30032643"
+uuid = "e1450e63-4bb3-523b-b2a4-4ffa8c0fd77d"
+version = "1.2.2"
+
 [[deps.Bzip2_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd"
@@ -95,6 +106,18 @@ git-tree-sha1 = "5afb5c5ba2688ca43a9ad2e5a91cbb93921ccfa1"
 uuid = "179af706-886a-5703-950a-314cd64e0468"
 version = "0.1.3"
 
+[[deps.COSMO]]
+deps = ["AMD", "COSMOAccelerators", "DataStructures", "IterTools", "LinearAlgebra", "MathOptInterface", "Pkg", "Printf", "QDLDL", "Random", "Reexport", "Requires", "SparseArrays", "Statistics", "SuiteSparse", "Test", "UnsafeArrays"]
+git-tree-sha1 = "9ee9809bde10b6875ca58aadcb22af8e36bd83f9"
+uuid = "1e616198-aa4e-51ec-90a2-23f7fbd31d8d"
+version = "0.8.9"
+
+[[deps.COSMOAccelerators]]
+deps = ["LinearAlgebra", "Random", "SparseArrays", "Test"]
+git-tree-sha1 = "b1153b40dd95f856e379f25ae335755ecc24298e"
+uuid = "bbd8fffe-5ad0-4d78-a55e-85575421b4ac"
+version = "0.1.0"
+
 [[deps.CSV]]
 deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"]
 git-tree-sha1 = "6c834533dc1fabd820c1db03c839bf97e45a3fab"
@@ -184,6 +207,18 @@ git-tree-sha1 = "ea32b83ca4fefa1768dc84e504cc0a94fb1ab8d1"
 uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb"
 version = "2.4.2"
 
+[[deps.Conda]]
+deps = ["Downloads", "JSON", "VersionParsing"]
+git-tree-sha1 = "b19db3927f0db4151cb86d073689f2428e524576"
+uuid = "8f4d0f93-b110-5947-807f-2305c1781a2d"
+version = "1.10.2"
+
+[[deps.CondaPkg]]
+deps = ["JSON3", "Markdown", "MicroMamba", "Pidfile", "Pkg", "Preferences", "TOML"]
+git-tree-sha1 = "8f7faef2ca039ee068cd971a80ccd710d23fb2eb"
+uuid = "992eb4ea-22a4-4c89-a5bb-47a3300528ab"
+version = "0.2.23"
+
 [[deps.ConstructionBase]]
 git-tree-sha1 = "76219f1ed5771adbb096743bff43fb5fdd4c1157"
 uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9"
@@ -368,6 +403,14 @@ deps = ["Artifacts", "Libdl"]
 uuid = "781609d7-10c4-51f6-84f2-b8444358ff6d"
 version = "6.2.1+6"
 
+[[deps.GeoPythonPlot]]
+deps = ["Conda", "CondaPkg", "Pkg", "PythonCall", "PythonPlot"]
+git-tree-sha1 = "90c6c18fabc99a66a574421337678947c8d53a29"
+repo-rev = "main"
+repo-url = "https://github.com/ggebbie/GeoPythonPlot.jl"
+uuid = "1e05a8e1-7dec-4f9e-9d3d-7df52321841b"
+version = "0.1.4"
+
 [[deps.GibbsSeaWater]]
 deps = ["GibbsSeaWater_jll", "Libdl", "Test"]
 git-tree-sha1 = "d1642ddc78d0754603d747d76fac0042a5a85104"
@@ -392,6 +435,18 @@ git-tree-sha1 = "f916ded6fdb10109f9cdb7a4b2c77feafc8e24e5"
 uuid = "91feb7a0-3508-11ea-1e8e-afea2c1c9a19"
 version = "0.1.3"
 
+[[deps.HDF5]]
+deps = ["Compat", "HDF5_jll", "Libdl", "MPIPreferences", "Mmap", "Preferences", "Printf", "Random", "Requires", "UUIDs"]
+git-tree-sha1 = "e856eef26cf5bf2b0f95f8f4fc37553c72c8641c"
+uuid = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f"
+version = "0.17.2"
+
+    [deps.HDF5.extensions]
+    MPIExt = "MPI"
+
+    [deps.HDF5.weakdeps]
+    MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195"
+
 [[deps.HDF5_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"]
 git-tree-sha1 = "38c8874692d48d5440d5752d6c74b0c6b0b60739"
@@ -450,6 +505,11 @@ git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2"
 uuid = "92d709cd-6900-40b7-9082-c6be49f344b6"
 version = "0.2.2"
 
+[[deps.IterTools]]
+git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023"
+uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e"
+version = "1.10.0"
+
 [[deps.IteratorInterfaceExtensions]]
 git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856"
 uuid = "82899510-4779-5014-852e-03e436cf321d"
@@ -467,6 +527,30 @@ git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a"
 uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
 version = "0.21.4"
 
+[[deps.JSON3]]
+deps = ["Dates", "Mmap", "Parsers", "PrecompileTools", "StructTypes", "UUIDs"]
+git-tree-sha1 = "eb3edce0ed4fa32f75a0a11217433c31d56bd48b"
+uuid = "0f8b85d8-7281-11e9-16c2-39a750bddbf1"
+version = "1.14.0"
+
+    [deps.JSON3.extensions]
+    JSON3ArrowExt = ["ArrowTypes"]
+
+    [deps.JSON3.weakdeps]
+    ArrowTypes = "31f734f8-188a-4ce0-8406-c8a06bd891cd"
+
+[[deps.JuMP]]
+deps = ["LinearAlgebra", "MacroTools", "MathOptInterface", "MutableArithmetics", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays"]
+git-tree-sha1 = "c95f443d4641b128d626a429b51d5185050135b5"
+uuid = "4076af6c-e467-56ae-b986-b466b2749572"
+version = "1.23.2"
+
+    [deps.JuMP.extensions]
+    JuMPDimensionalDataExt = "DimensionalData"
+
+    [deps.JuMP.weakdeps]
+    DimensionalData = "0703355e-b756-11e9-17c0-8b28908087d0"
+
 [[deps.LLVMOpenMP_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
 git-tree-sha1 = "78211fb6cbc872f77cad3fc0b6cf647d923f4929"
@@ -482,6 +566,11 @@ weakdeps = ["Serialization"]
     [deps.LRUCache.extensions]
     SerializationExt = ["Serialization"]
 
+[[deps.LaTeXStrings]]
+git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec"
+uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f"
+version = "1.3.1"
+
 [[deps.LazyArtifacts]]
 deps = ["Artifacts", "Pkg"]
 uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3"
@@ -560,6 +649,12 @@ git-tree-sha1 = "7f26c8fc5229e68484e0b3447312c98e16207d11"
 uuid = "5ced341a-0733-55b8-9ab6-a4889d929147"
 version = "1.10.0+0"
 
+[[deps.MAT]]
+deps = ["BufferedStreams", "CodecZlib", "HDF5", "SparseArrays"]
+git-tree-sha1 = "1d2dd9b186742b0f317f2530ddcbf00eebb18e96"
+uuid = "23992714-dd62-5051-b70f-ba57cb901cac"
+version = "0.10.7"
+
 [[deps.MPICH_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"]
 git-tree-sha1 = "19d4bd098928a3263693991500d05d74dbdc2004"
@@ -611,6 +706,12 @@ deps = ["Artifacts", "Libdl"]
 uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"
 version = "2.28.2+1"
 
+[[deps.MicroMamba]]
+deps = ["Pkg", "Scratch", "micromamba_jll"]
+git-tree-sha1 = "011cab361eae7bcd7d278f0a7a00ff9c69000c51"
+uuid = "0b3b1443-0f03-428d-bdfb-f27f9c1191ea"
+version = "0.1.14"
+
 [[deps.MicrosoftMPI_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "f12a29c4400ba812841c6ace3f4efbb6dbb3ba01"
@@ -754,6 +855,12 @@ git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821"
 uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
 version = "2.8.1"
 
+[[deps.Pidfile]]
+deps = ["FileWatching", "Test"]
+git-tree-sha1 = "2d8aaf8ee10df53d0dfb9b8ee44ae7c04ced2b03"
+uuid = "fa939f87-e72e-5be4-a000-7fc836dbe307"
+version = "1.3.0"
+
 [[deps.Pkg]]
 deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
 uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
@@ -796,6 +903,24 @@ git-tree-sha1 = "77a42d78b6a92df47ab37e177b2deac405e1c88f"
 uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d"
 version = "1.2.1"
 
+[[deps.PythonCall]]
+deps = ["CondaPkg", "Dates", "Libdl", "MacroTools", "Markdown", "Pkg", "REPL", "Requires", "Serialization", "Tables", "UnsafePointers"]
+git-tree-sha1 = "06a778ec6d6e76b0c2fb661436a18bce853ec45f"
+uuid = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d"
+version = "0.9.23"
+
+[[deps.PythonPlot]]
+deps = ["Colors", "CondaPkg", "LaTeXStrings", "PythonCall", "Sockets", "Test", "VersionParsing"]
+git-tree-sha1 = "6ec334b52f9547f84fde749e512a97d0372ae395"
+uuid = "274fc56d-3b97-40fa-a1cd-1b4a50311bf9"
+version = "1.0.5"
+
+[[deps.QDLDL]]
+deps = ["AMD", "LinearAlgebra", "SparseArrays"]
+git-tree-sha1 = "5a3c14e534faf5b66c4633b5770a665ec1a87503"
+uuid = "bfc457fd-c171-5ab7-bd9e-d5dbfc242d63"
+version = "0.4.1"
+
 [[deps.QuadGK]]
 deps = ["DataStructures", "LinearAlgebra"]
 git-tree-sha1 = "1d587203cf851a51bf1ea31ad7ff89eff8d625ea"
@@ -954,6 +1079,12 @@ version = "1.3.2"
     ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
     InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112"
 
+[[deps.StructTypes]]
+deps = ["Dates", "UUIDs"]
+git-tree-sha1 = "159331b30e94d7b11379037feeb9b690950cace8"
+uuid = "856f2bd8-1eba-4b0a-8007-ebc267875bd4"
+version = "1.11.0"
+
 [[deps.SuiteSparse]]
 deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"]
 uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9"
@@ -1038,6 +1169,21 @@ version = "3.6.4"
     Term = "22787eb5-b846-44ae-b979-8e399b8463ab"
     Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d"
 
+[[deps.UnsafeArrays]]
+git-tree-sha1 = "da0c9ca60d3371a4bc86b4e65c45db17086fb3ac"
+uuid = "c4a57d5a-5b31-53a6-b365-19f8c011fbd6"
+version = "1.0.6"
+
+[[deps.UnsafePointers]]
+git-tree-sha1 = "c81331b3b2e60a982be57c046ec91f599ede674a"
+uuid = "e17b2a0c-0bdf-430a-bd0c-3a23cae4ff39"
+version = "1.0.0"
+
+[[deps.VersionParsing]]
+git-tree-sha1 = "58d6e80b4ee071f5efd07fda82cb9fbe17200868"
+uuid = "81def892-9a0e-5fdd-b105-ffc91e053289"
+version = "1.3.0"
+
 [[deps.WeakRefStrings]]
 deps = ["DataAPI", "InlineStrings", "Parsers"]
 git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23"
@@ -1095,6 +1241,12 @@ git-tree-sha1 = "3282b7d16ae7ac3e57ec2f3fa8fafb564d8f9f7f"
 uuid = "337d8026-41b4-5cde-a456-74a10e5b31d1"
 version = "1.10.1+0"
 
+[[deps.micromamba_jll]]
+deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"]
+git-tree-sha1 = "b4a5a3943078f9fd11ae0b5ab1bdbf7718617945"
+uuid = "f8abcde7-e9b7-5caa-b8af-a437887ae8e4"
+version = "1.5.8+0"
+
 [[deps.nghttp2_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"

Project.toml

@@ -1,7 +1,7 @@
 name = "TMI"
 uuid = "582500f6-28c8-4d8f-aabe-b197735ec1d4"
 authors = ["G Jake Gebbie <ggebbie@whoi.edu>"]
-version = "0.2.18"
+version = "0.2.19"
 
 [deps]
 COSMO = "1e616198-aa4e-51ec-90a2-23f7fbd31d8d"