Merge pull request #153 from ggebbie/quadprog

Mass fractions and Quadratic programming

Manifest.toml

@@ -2,7 +2,13 @@
 
 julia_version = "1.10.2"
 manifest_format = "2.0"
-project_hash = "37f131f1271e65a099d2bf87d3c7e0f462e7edda"
+project_hash = "7a008ed79c52a95c32c9410d219c93d0f9b54c18"
+
+[[deps.AMD]]
+deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"]
+git-tree-sha1 = "45a1272e3f809d36431e57ab22703c6896b8908f"
+uuid = "14f7f29c-3bd6-536c-9a0b-7339e30b5a3e"
+version = "0.5.3"
 
 [[deps.Adapt]]
 deps = ["LinearAlgebra", "Requires"]
@@ -52,6 +58,12 @@ version = "1.0.1"
 [[deps.Base64]]
 uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
 
+[[deps.BenchmarkTools]]
+deps = ["JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"]
+git-tree-sha1 = "f1f03a9fa24271160ed7e73051fba3c1a759b53f"
+uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf"
+version = "1.4.0"
+
 [[deps.BitFlags]]
 git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d"
 uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35"
@@ -74,6 +86,18 @@ git-tree-sha1 = "ed2e76c1c3c43fd9d0cb9248674620b29d71f2d1"
 uuid = "179af706-886a-5703-950a-314cd64e0468"
 version = "0.1.2"
 
+[[deps.COSMO]]
+deps = ["AMD", "COSMOAccelerators", "DataStructures", "IterTools", "LinearAlgebra", "MathOptInterface", "Pkg", "Printf", "QDLDL", "Random", "Reexport", "Requires", "SparseArrays", "Statistics", "SuiteSparse", "Test", "UnsafeArrays"]
+git-tree-sha1 = "a0531f33abb67c7bddcf0a50cfe88cbf15155d75"
+uuid = "1e616198-aa4e-51ec-90a2-23f7fbd31d8d"
+version = "0.8.8"
+
+[[deps.COSMOAccelerators]]
+deps = ["LinearAlgebra", "Random", "SparseArrays", "Test"]
+git-tree-sha1 = "b1153b40dd95f856e379f25ae335755ecc24298e"
+uuid = "bbd8fffe-5ad0-4d78-a55e-85575421b4ac"
+version = "0.1.0"
+
 [[deps.CSV]]
 deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"]
 git-tree-sha1 = "44dbf560808d49041989b8a96cae4cffbeb7966a"
@@ -92,6 +116,12 @@ git-tree-sha1 = "e30f2f4e20f7f186dc36529910beaedc60cfa644"
 uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
 version = "1.16.0"
 
+[[deps.CodecBzip2]]
+deps = ["Bzip2_jll", "Libdl", "TranscodingStreams"]
+git-tree-sha1 = "9b1ca1aa6ce3f71b3d1840c538a8210a043625eb"
+uuid = "523fee87-0ab8-5b00-afb7-3ecf72e48cfd"
+version = "0.8.2"
+
 [[deps.CodecZlib]]
 deps = ["TranscodingStreams", "Zlib_jll"]
 git-tree-sha1 = "9c209fb7536406834aa938fb149964b985de6c83"
@@ -392,6 +422,11 @@ git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2"
 uuid = "92d709cd-6900-40b7-9082-c6be49f344b6"
 version = "0.2.2"
 
+[[deps.IterTools]]
+git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023"
+uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e"
+version = "1.10.0"
+
 [[deps.IteratorInterfaceExtensions]]
 git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856"
 uuid = "82899510-4779-5014-852e-03e436cf321d"
@@ -403,6 +438,24 @@ git-tree-sha1 = "abc9885a7ca2052a736a600f7fa66209f96506e1"
 uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210"
 version = "1.4.1"
 
+[[deps.JSON]]
+deps = ["Dates", "Mmap", "Parsers", "Unicode"]
+git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a"
+uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
+version = "0.21.4"
+
+[[deps.JuMP]]
+deps = ["LinearAlgebra", "MacroTools", "MathOptInterface", "MutableArithmetics", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays"]
+git-tree-sha1 = "5036b4cf6d85b08d80de09ef65b4d951f6e68659"
+uuid = "4076af6c-e467-56ae-b986-b466b2749572"
+version = "1.19.0"
+
+    [deps.JuMP.extensions]
+    JuMPDimensionalDataExt = "DimensionalData"
+
+    [deps.JuMP.weakdeps]
+    DimensionalData = "0703355e-b756-11e9-17c0-8b28908087d0"
+
 [[deps.LLVMOpenMP_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b"
@@ -521,6 +574,12 @@ version = "0.1.8"
 deps = ["Base64"]
 uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
 
+[[deps.MathOptInterface]]
+deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "DataStructures", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test", "Unicode"]
+git-tree-sha1 = "8b40681684df46785a0012d352982e22ac3be59e"
+uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee"
+version = "1.25.2"
+
 [[deps.MbedTLS]]
 deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"]
 git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b"
@@ -551,6 +610,12 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804"
 uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
 version = "2023.1.10"
 
+[[deps.MutableArithmetics]]
+deps = ["LinearAlgebra", "SparseArrays", "Test"]
+git-tree-sha1 = "806eea990fb41f9b36f1253e5697aa645bf6a9f8"
+uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0"
+version = "1.4.0"
+
 [[deps.NCDatasets]]
 deps = ["CFTime", "CommonDataModel", "DataStructures", "Dates", "NetCDF_jll", "NetworkOptions", "Printf"]
 git-tree-sha1 = "4263c4220f22e20729329838bf7e94a49d1ac32f"
@@ -687,6 +752,16 @@ version = "1.4.0"
 deps = ["Unicode"]
 uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
 
+[[deps.Profile]]
+deps = ["Printf"]
+uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79"
+
+[[deps.QDLDL]]
+deps = ["AMD", "LinearAlgebra", "SparseArrays"]
+git-tree-sha1 = "5a3c14e534faf5b66c4633b5770a665ec1a87503"
+uuid = "bfc457fd-c171-5ab7-bd9e-d5dbfc242d63"
+version = "0.4.1"
+
 [[deps.QuadGK]]
 deps = ["DataStructures", "LinearAlgebra"]
 git-tree-sha1 = "6ec7ac8412e83d57e313393220879ede1740f9ee"
@@ -917,6 +992,11 @@ version = "3.6.0"
     Term = "22787eb5-b846-44ae-b979-8e399b8463ab"
     Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d"
 
+[[deps.UnsafeArrays]]
+git-tree-sha1 = "e7f1c67ba99ac6df440de191fa4d5cbfcbdddcd1"
+uuid = "c4a57d5a-5b31-53a6-b365-19f8c011fbd6"
+version = "1.0.5"
+
 [[deps.WeakRefStrings]]
 deps = ["DataAPI", "InlineStrings", "Parsers"]
 git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23"

Project.toml

@@ -1,16 +1,18 @@
 name = "TMI"
 uuid = "582500f6-28c8-4d8f-aabe-b197735ec1d4"
 authors = ["G Jake Gebbie <ggebbie@whoi.edu>"]
-version = "0.2.8"
+version = "0.2.9"
 
 [deps]
+COSMO = "1e616198-aa4e-51ec-90a2-23f7fbd31d8d"
 CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"
 Distances = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7"
 Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
 Downloads = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
 GibbsSeaWater = "9a22fb26-0b63-4589-b28e-8f9d0b5c3d05"
 GoogleDrive = "91feb7a0-3508-11ea-1e8e-afea2c1c9a19"
 Interpolations = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59"
+JuMP = "4076af6c-e467-56ae-b986-b466b2749572"
 LineSearches = "d3d80556-e9d4-5f37-9878-2ab0fcc64255"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 MAT = "23992714-dd62-5051-b70f-ba57cb901cac"