[2.0.2.post1]

Changed

• Retaining FASTA header comments in output.

[2.0.2]

Fixed

• Typo in melt_duplex.
• Duplicated output from melt_duplex when -F is not used.
• Wrong variable name in duplex module.

Changed

• Version tag now stored in const module.
• Now using black for code formatting.

[2.0.1.post5]

Added

• Version control of scripts and --version flag.
• melt_duplex output in FASTA format.
• FASTA header key-value delimiter as option.

Changed

• FASTA input parsed with biopython SimpleFastaParser.

Fixed

• Proper script help page formatting.
• Bug that duplicated every line in the output.

[2.0.1] - 2018-03-27

Changed

• Re-packed software for pypi.

Added

• Default parameter values.

1.4.5

Fixed

• Fixed issue with new interaction type labeling system.

Added

• Automatic R packages installation (argparser and ggplot2).

Changed

• Separated curve calculation and fraction calculation to different functions.
• Harmonized melt_X.py scripts output.
• Better fasta reading management: not kept in memory and considering sequences with same header as separate fasta items.

Added

• plot_melt_curves_coupled.R for single-oligo coupled melting curve plot.
• Allowed for initial formamide and sodium concentration for melting temperature correction.

1.4.4

Changed

• Renamed oligomeltlib.py to meltlib.py.
• Renamed oligomelt.py to melt_duplex.py.

Added

• melt_second.py to perform formamide correction and melting curve calculation for secondary structures predicted with OligoArrayAux.

1.4.3

Added

• Melting curve plotting script (from fish-conditions repo).

Changed

• Moved functions to separate library

Fixed

• Now melting curves show the proper (inverted) dissociation curve.

1.4.2

Changed

• Now using user-defined formamide m-value for wright correction.